| brainbox/__init__.py |
(no function) |
5 |
2 |
0 |
60% |
| brainbox/atlas.py |
_label2values |
4 |
4 |
0 |
0% |
| brainbox/atlas.py |
plot_atlas |
71 |
71 |
0 |
0% |
| brainbox/atlas.py |
(no function) |
6 |
6 |
0 |
0% |
| brainbox/behavior/dlc.py |
plt_window |
1 |
1 |
0 |
0% |
| brainbox/behavior/dlc.py |
insert_idx |
7 |
1 |
0 |
86% |
| brainbox/behavior/dlc.py |
get_speed |
8 |
8 |
0 |
0% |
| brainbox/behavior/dlc.py |
get_speed_for_features |
3 |
3 |
0 |
0% |
| brainbox/behavior/dlc.py |
get_sniffs |
2 |
2 |
0 |
0% |
| brainbox/behavior/dlc.py |
get_dlc_everything |
13 |
13 |
0 |
0% |
| brainbox/behavior/dlc.py |
get_smooth_pupil_diameter |
24 |
3 |
0 |
88% |
| brainbox/behavior/dlc.py |
plot_trace_on_frame |
42 |
42 |
0 |
0% |
| brainbox/behavior/dlc.py |
plot_wheel_position |
21 |
21 |
0 |
0% |
| brainbox/behavior/dlc.py |
_bin_window_licks |
13 |
13 |
0 |
0% |
| brainbox/behavior/dlc.py |
plot_lick_hist |
12 |
12 |
0 |
0% |
| brainbox/behavior/dlc.py |
plot_lick_raster |
9 |
9 |
0 |
0% |
| brainbox/behavior/dlc.py |
plot_motion_energy_hist |
35 |
35 |
0 |
0% |
| brainbox/behavior/dlc.py |
plot_speed_hist |
22 |
22 |
0 |
0% |
| brainbox/behavior/dlc.py |
plot_pupil_diameter_hist |
17 |
17 |
0 |
0% |
| brainbox/behavior/training.py |
get_lab_training_status |
5 |
5 |
0 |
0% |
| brainbox/behavior/training.py |
get_subject_training_status |
12 |
12 |
0 |
0% |
| brainbox/behavior/training.py |
get_sessions |
51 |
51 |
0 |
0% |
| brainbox/behavior/training.py |
get_training_status |
38 |
1 |
0 |
97% |
| brainbox/behavior/training.py |
display_status |
5 |
5 |
0 |
0% |
| brainbox/behavior/training.py |
compute_performance |
14 |
2 |
0 |
86% |
| brainbox/behavior/training.py |
compute_psychometric |
17 |
4 |
0 |
76% |
| brainbox/behavior/training.py |
compute_reaction_time |
16 |
16 |
0 |
0% |
| brainbox/behavior/training.py |
plot_psychometric |
38 |
7 |
0 |
82% |
| brainbox/behavior/training.py |
plot_reaction_time |
24 |
24 |
0 |
0% |
| brainbox/behavior/training.py |
plot_reaction_time_over_trials |
19 |
19 |
0 |
0% |
| brainbox/behavior/wheel.py |
interpolate_position |
9 |
3 |
0 |
67% |
| brainbox/behavior/wheel.py |
velocity |
12 |
12 |
0 |
0% |
| brainbox/behavior/wheel.py |
velocity_smoothed |
13 |
13 |
0 |
0% |
| brainbox/behavior/wheel.py |
last_movement_onset |
16 |
16 |
0 |
0% |
| brainbox/behavior/wheel.py |
movements |
85 |
16 |
0 |
81% |
| brainbox/behavior/wheel.py |
cm_to_deg |
1 |
1 |
0 |
0% |
| brainbox/behavior/wheel.py |
traces_by_trial |
9 |
2 |
0 |
78% |
| brainbox/behavior/wheel.py |
(no function) |
29 |
2 |
0 |
93% |
| brainbox/core.py |
TimeSeries.__init__ |
11 |
2 |
0 |
82% |
| brainbox/core.py |
TimeSeries.copy |
1 |
1 |
0 |
0% |
| brainbox/ephys_plots.py |
image_lfp_spectrum_plot |
25 |
25 |
0 |
0% |
| brainbox/ephys_plots.py |
image_rms_plot |
24 |
24 |
0 |
0% |
| brainbox/ephys_plots.py |
scatter_raster_plot |
25 |
25 |
0 |
0% |
| brainbox/ephys_plots.py |
image_fr_plot |
10 |
10 |
0 |
0% |
| brainbox/ephys_plots.py |
image_crosscorr_plot |
10 |
10 |
0 |
0% |
| brainbox/ephys_plots.py |
scatter_amp_depth_fr_plot |
12 |
12 |
0 |
0% |
| brainbox/ephys_plots.py |
probe_lfp_spectrum_plot |
14 |
14 |
0 |
0% |
| brainbox/ephys_plots.py |
probe_rms_plot |
10 |
10 |
0 |
0% |
| brainbox/ephys_plots.py |
line_fr_plot |
11 |
11 |
0 |
0% |
| brainbox/ephys_plots.py |
line_amp_plot |
15 |
15 |
0 |
0% |
| brainbox/ephys_plots.py |
plot_brain_regions |
39 |
6 |
0 |
85% |
| brainbox/ephys_plots.py |
plot_cdf |
19 |
19 |
0 |
0% |
| brainbox/ephys_plots.py |
plot_cdf.histc |
5 |
5 |
0 |
0% |
| brainbox/ephys_plots.py |
image_raw_data |
15 |
15 |
0 |
0% |
| brainbox/ephys_plots.py |
image_raw_data.gain2level |
1 |
1 |
0 |
0% |
| brainbox/io/one.py |
load_lfp |
7 |
7 |
0 |
0% |
| brainbox/io/one.py |
_channels_alyx2bunch |
2 |
2 |
0 |
0% |
| brainbox/io/one.py |
_channels_traj2bunch |
3 |
3 |
0 |
0% |
| brainbox/io/one.py |
_load_spike_sorting |
15 |
1 |
0 |
93% |
| brainbox/io/one.py |
_get_attributes |
7 |
5 |
0 |
29% |
| brainbox/io/one.py |
_load_channels_locations_from_disk |
20 |
9 |
0 |
55% |
| brainbox/io/one.py |
channel_locations_interpolation |
21 |
3 |
0 |
86% |
| brainbox/io/one.py |
_load_channel_locations_traj |
49 |
47 |
0 |
4% |
| brainbox/io/one.py |
load_channel_locations |
14 |
14 |
0 |
0% |
| brainbox/io/one.py |
load_spike_sorting_fast |
15 |
15 |
0 |
0% |
| brainbox/io/one.py |
load_spike_sorting |
7 |
1 |
0 |
86% |
| brainbox/io/one.py |
load_spike_sorting_with_channel |
14 |
14 |
0 |
0% |
| brainbox/io/one.py |
_remove_old_clusters |
5 |
5 |
0 |
0% |
| brainbox/io/one.py |
merge_clusters_channels |
20 |
20 |
0 |
0% |
| brainbox/io/one.py |
load_passive_rfmap |
7 |
7 |
0 |
0% |
| brainbox/io/one.py |
load_wheel_reaction_times |
12 |
12 |
0 |
0% |
| brainbox/io/one.py |
load_channels_from_insertion |
23 |
23 |
0 |
0% |
| brainbox/io/one.py |
SpikeSortingLoader.__post_init__ |
22 |
10 |
0 |
55% |
| brainbox/io/one.py |
SpikeSortingLoader._load_object |
7 |
3 |
0 |
57% |
| brainbox/io/one.py |
SpikeSortingLoader.load_spike_sorting_object |
2 |
2 |
0 |
0% |
| brainbox/io/one.py |
SpikeSortingLoader.get_version |
3 |
3 |
0 |
0% |
| brainbox/io/one.py |
SpikeSortingLoader.download_spike_sorting_object |
11 |
2 |
0 |
82% |
| brainbox/io/one.py |
SpikeSortingLoader.raw_electrophysiology |
6 |
4 |
0 |
33% |
| brainbox/io/one.py |
SpikeSortingLoader.load_channels |
13 |
1 |
0 |
92% |
| brainbox/io/one.py |
SpikeSortingLoader.load_spike_sorting |
15 |
2 |
0 |
87% |
| brainbox/io/one.py |
SpikeSortingLoader._assert_version_consistency |
6 |
1 |
0 |
83% |
| brainbox/io/one.py |
SpikeSortingLoader.compute_metrics |
3 |
3 |
0 |
0% |
| brainbox/io/one.py |
SpikeSortingLoader.merge_clusters |
21 |
8 |
0 |
62% |
| brainbox/io/one.py |
SpikeSortingLoader.url |
2 |
2 |
0 |
0% |
| brainbox/io/one.py |
SpikeSortingLoader._get_probe_info |
10 |
3 |
0 |
70% |
| brainbox/io/one.py |
SpikeSortingLoader.timesprobe2times |
5 |
5 |
0 |
0% |
| brainbox/io/one.py |
SpikeSortingLoader.raster |
30 |
9 |
0 |
70% |
| brainbox/io/one.py |
SpikeSortingLoader.plot_rawdata_snippet |
26 |
26 |
0 |
0% |
| brainbox/io/one.py |
SessionLoader.__post_init__ |
10 |
4 |
0 |
60% |
| brainbox/io/one.py |
SessionLoader.load_session_data |
15 |
4 |
0 |
73% |
| brainbox/io/one.py |
SessionLoader._find_behaviour_collection |
9 |
2 |
0 |
78% |
| brainbox/io/one.py |
SessionLoader.load_wheel |
10 |
1 |
0 |
90% |
| brainbox/io/one.py |
SessionLoader.load_licks |
1 |
1 |
0 |
0% |
| brainbox/io/one.py |
SessionLoader.load_pupil |
26 |
9 |
0 |
65% |
| brainbox/io/one.py |
SessionLoader._check_video_timestamps |
10 |
6 |
0 |
40% |
| brainbox/io/one.py |
EphysSessionLoader.__init__ |
8 |
8 |
0 |
0% |
| brainbox/io/one.py |
EphysSessionLoader.load_session_data |
2 |
2 |
0 |
0% |
| brainbox/io/one.py |
EphysSessionLoader.load_spike_sorting |
6 |
6 |
0 |
0% |
| brainbox/io/one.py |
EphysSessionLoader.probes |
1 |
1 |
0 |
0% |
| brainbox/io/spikeglx.py |
extract_waveforms |
23 |
23 |
0 |
0% |
| brainbox/io/spikeglx.py |
Streamer.read |
13 |
2 |
0 |
85% |
| brainbox/io/spikeglx.py |
Streamer._download_raw_partial |
58 |
7 |
0 |
88% |
| brainbox/lfp.py |
butter_filter |
17 |
17 |
0 |
0% |
| brainbox/lfp.py |
power_spectrum |
4 |
4 |
0 |
0% |
| brainbox/lfp.py |
coherence |
8 |
8 |
0 |
0% |
| brainbox/lfp.py |
(no function) |
5 |
5 |
0 |
0% |
| brainbox/metrics/electrode_drift.py |
estimate_drift |
28 |
28 |
13 |
0% |
| brainbox/metrics/single_units.py |
unit_stability |
23 |
23 |
0 |
0% |
| brainbox/metrics/single_units.py |
missed_spikes_est |
11 |
11 |
0 |
0% |
| brainbox/metrics/single_units.py |
wf_similarity |
13 |
13 |
0 |
0% |
| brainbox/metrics/single_units.py |
firing_rate_coeff_var |
6 |
6 |
0 |
0% |
| brainbox/metrics/single_units.py |
firing_rate_fano_factor |
6 |
6 |
0 |
0% |
| brainbox/metrics/single_units.py |
average_drift |
2 |
2 |
0 |
0% |
| brainbox/metrics/single_units.py |
pres_ratio |
4 |
4 |
0 |
0% |
| brainbox/metrics/single_units.py |
ptp_over_noise |
23 |
23 |
0 |
0% |
| brainbox/metrics/single_units.py |
contamination_alt |
6 |
6 |
0 |
0% |
| brainbox/metrics/single_units.py |
contamination |
10 |
10 |
0 |
0% |
| brainbox/metrics/single_units.py |
_max_acceptable_cont |
6 |
6 |
0 |
0% |
| brainbox/metrics/single_units.py |
slidingRP_viol |
18 |
18 |
0 |
0% |
| brainbox/metrics/single_units.py |
noise_cutoff |
23 |
23 |
0 |
0% |
| brainbox/metrics/single_units.py |
spike_sorting_metrics |
5 |
5 |
0 |
0% |
| brainbox/metrics/single_units.py |
quick_unit_metrics |
46 |
46 |
0 |
0% |
| brainbox/metrics/single_units.py |
compute_labels |
7 |
7 |
0 |
0% |
| brainbox/plot.py |
feat_vars |
28 |
28 |
0 |
0% |
| brainbox/plot.py |
missed_spikes_est |
21 |
21 |
0 |
0% |
| brainbox/plot.py |
wf_comp |
18 |
18 |
0 |
0% |
| brainbox/plot.py |
amp_heatmap |
36 |
36 |
0 |
0% |
| brainbox/plot.py |
firing_rate |
17 |
17 |
0 |
0% |
| brainbox/plot.py |
peri_event_time_histogram |
47 |
47 |
0 |
0% |
| brainbox/plot.py |
driftmap |
13 |
5 |
0 |
62% |
| brainbox/plot.py |
pres_ratio |
9 |
9 |
0 |
0% |
| brainbox/plot.py |
driftmap_color |
36 |
36 |
0 |
0% |
| brainbox/plot_base.py |
ImagePlot.set_scale |
3 |
1 |
0 |
67% |
| brainbox/plot_base.py |
ImagePlot.set_offset |
3 |
1 |
0 |
67% |
| brainbox/plot_base.py |
ProbePlot.set_scale |
3 |
1 |
0 |
67% |
| brainbox/plot_base.py |
ProbePlot._set_lim_list |
4 |
1 |
0 |
75% |
| brainbox/plot_base.py |
ProbePlot.set_offset |
3 |
1 |
0 |
67% |
| brainbox/plot_base.py |
ScatterPlot.__init__ |
14 |
2 |
0 |
86% |
| brainbox/plot_base.py |
add_lines |
5 |
5 |
0 |
0% |
| brainbox/plot_base.py |
plot_image |
16 |
16 |
0 |
0% |
| brainbox/plot_base.py |
plot_scatter |
27 |
27 |
0 |
0% |
| brainbox/plot_base.py |
plot_probe |
25 |
25 |
0 |
0% |
| brainbox/plot_base.py |
plot_line |
13 |
13 |
0 |
0% |
| brainbox/population/cca.py |
_smooth |
6 |
6 |
0 |
0% |
| brainbox/population/cca.py |
_pca |
4 |
4 |
0 |
0% |
| brainbox/population/cca.py |
preprocess |
5 |
5 |
0 |
0% |
| brainbox/population/cca.py |
split_trials |
8 |
8 |
0 |
0% |
| brainbox/population/cca.py |
split_timepoints |
4 |
4 |
0 |
0% |
| brainbox/population/cca.py |
fit_cca |
4 |
4 |
0 |
0% |
| brainbox/population/cca.py |
get_cca_projection |
2 |
2 |
0 |
0% |
| brainbox/population/cca.py |
get_correlations |
4 |
4 |
0 |
0% |
| brainbox/population/cca.py |
shuffle_analysis |
1 |
1 |
0 |
0% |
| brainbox/population/cca.py |
plot_correlations |
14 |
1 |
0 |
93% |
| brainbox/population/cca.py |
plot_pairwise_correlations |
29 |
29 |
0 |
0% |
| brainbox/population/cca.py |
plot_pairwise_correlations_mult |
31 |
31 |
0 |
0% |
| brainbox/population/cca.py |
bin_spikes_trials |
5 |
5 |
0 |
0% |
| brainbox/population/cca.py |
split_by_area |
7 |
7 |
0 |
0% |
| brainbox/population/cca.py |
get_event_bin_indexes |
9 |
9 |
0 |
0% |
| brainbox/population/cca.py |
(no function) |
70 |
48 |
0 |
31% |
| brainbox/population/decode.py |
classify |
25 |
7 |
0 |
72% |
| brainbox/population/decode.py |
regress |
24 |
2 |
0 |
92% |
| brainbox/population/decode.py |
lda_project |
27 |
27 |
0 |
0% |
| brainbox/processing.py |
sync |
32 |
6 |
0 |
81% |
| brainbox/processing.py |
bin_spikes |
9 |
9 |
0 |
0% |
| brainbox/processing.py |
get_units_bunch |
14 |
14 |
0 |
0% |
| brainbox/processing.py |
filter_units |
24 |
24 |
0 |
0% |
| brainbox/quality/lfp_qc.py |
_plot_spectra |
23 |
23 |
0 |
0% |
| brainbox/quality/lfp_qc.py |
_plot_rmsmap |
27 |
27 |
0 |
0% |
| brainbox/quality/lfp_qc.py |
(no function) |
21 |
21 |
0 |
0% |
| brainbox/quality/permutation_test.py |
permut_test |
19 |
19 |
0 |
0% |
| brainbox/quality/permutation_test.py |
plot_permut_test |
8 |
8 |
0 |
0% |
| brainbox/quality/permutation_test.py |
(no function) |
13 |
13 |
0 |
0% |
| brainbox/singlecell.py |
bin_spikes |
14 |
14 |
0 |
0% |
| brainbox/singlecell.py |
bin_spikes2D |
18 |
18 |
0 |
0% |
| brainbox/singlecell.py |
calculate_peths |
48 |
1 |
0 |
98% |
| brainbox/singlecell.py |
firing_rate |
8 |
8 |
0 |
0% |
| brainbox/spike_features.py |
depth |
22 |
22 |
0 |
0% |
| brainbox/spike_features.py |
(no function) |
3 |
3 |
0 |
0% |
| brainbox/task/_knockoff.py |
RegressionFDR.__init__ |
36 |
36 |
0 |
0% |
| brainbox/task/_knockoff.py |
RegressionFDR.threshold |
3 |
3 |
0 |
0% |
| brainbox/task/_knockoff.py |
_design_knockoff_sdp |
26 |
26 |
0 |
0% |
| brainbox/task/_knockoff.py |
_design_knockoff_equi |
14 |
14 |
0 |
0% |
| brainbox/task/_knockoff.py |
_get_knmat |
15 |
15 |
0 |
0% |
| brainbox/task/_statsmodels.py |
_ecdf |
2 |
2 |
0 |
0% |
| brainbox/task/_statsmodels.py |
multipletests |
85 |
85 |
0 |
0% |
| brainbox/task/_statsmodels.py |
fdrcorrection |
27 |
27 |
0 |
0% |
| brainbox/task/_statsmodels.py |
fdrcorrection_twostage |
40 |
40 |
0 |
0% |
| brainbox/task/_statsmodels.py |
local_fdr |
19 |
19 |
0 |
0% |
| brainbox/task/_statsmodels.py |
NullDistribution.__init__ |
14 |
14 |
0 |
0% |
| brainbox/task/_statsmodels.py |
NullDistribution.__init__.xform |
13 |
13 |
0 |
0% |
| brainbox/task/_statsmodels.py |
NullDistribution.__init__.fun |
8 |
8 |
0 |
0% |
| brainbox/task/_statsmodels.py |
NullDistribution.pdf |
2 |
2 |
0 |
0% |
| brainbox/task/closed_loop.py |
responsive_units |
10 |
2 |
0 |
80% |
| brainbox/task/closed_loop.py |
differentiate_units |
10 |
1 |
0 |
90% |
| brainbox/task/closed_loop.py |
compute_comparison_statistics |
21 |
5 |
0 |
76% |
| brainbox/task/closed_loop.py |
generate_pseudo_session |
34 |
16 |
0 |
53% |
| brainbox/task/closed_loop.py |
get_impostor_target |
34 |
5 |
0 |
85% |
| brainbox/task/passive.py |
get_rf_map_over_depth |
26 |
1 |
0 |
96% |
| brainbox/task/passive.py |
get_stim_aligned_activity |
27 |
5 |
0 |
81% |
| brainbox/task/trials.py |
find_trial_ids |
61 |
16 |
0 |
74% |
| brainbox/task/trials.py |
get_event_aligned_raster |
26 |
5 |
0 |
81% |
| brainbox/task/trials.py |
get_psth |
7 |
7 |
0 |
0% |
| brainbox/task/trials.py |
filter_by_trial |
1 |
1 |
0 |
0% |
| brainbox/task/trials.py |
filter_correct_incorrect_left_right |
18 |
18 |
0 |
0% |
| brainbox/task/trials.py |
filter_correct_incorrect |
12 |
12 |
0 |
0% |
| brainbox/task/trials.py |
filter_left_right |
12 |
12 |
0 |
0% |
| brainbox/task/trials.py |
filter_trials |
7 |
7 |
0 |
0% |
| brainbox/video.py |
motion_energy |
8 |
1 |
0 |
88% |
| ibllib/__init__.py |
(no function) |
9 |
1 |
0 |
89% |
| ibllib/atlas/atlas.py |
BrainAtlas |
1 |
1 |
0 |
0% |
| ibllib/atlas/atlas.py |
NeedlesAtlas |
1 |
1 |
0 |
0% |
| ibllib/atlas/atlas.py |
MRITorontoAtlas |
1 |
1 |
0 |
0% |
| ibllib/atlas/atlas.py |
FranklinPaxinosAtlas |
1 |
1 |
0 |
0% |
| ibllib/atlas/flatmaps.py |
FlatMap |
1 |
1 |
0 |
0% |
| ibllib/atlas/flatmaps.py |
circles |
1 |
1 |
0 |
0% |
| ibllib/atlas/flatmaps.py |
swanson |
1 |
1 |
0 |
0% |
| ibllib/atlas/flatmaps.py |
swanson_json |
1 |
1 |
0 |
0% |
| ibllib/atlas/genes.py |
allen_gene_expression |
1 |
1 |
0 |
0% |
| ibllib/atlas/genes.py |
(no function) |
4 |
4 |
0 |
0% |
| ibllib/atlas/plots.py |
plot_scalar_on_slice |
1 |
1 |
0 |
0% |
| ibllib/atlas/plots.py |
plot_scalar_on_flatmap |
1 |
1 |
0 |
0% |
| ibllib/atlas/plots.py |
plot_volume_on_slice |
1 |
1 |
0 |
0% |
| ibllib/atlas/plots.py |
plot_points_on_slice |
1 |
1 |
0 |
0% |
| ibllib/atlas/plots.py |
plot_scalar_on_barplot |
1 |
1 |
0 |
0% |
| ibllib/atlas/plots.py |
plot_swanson_vector |
1 |
1 |
0 |
0% |
| ibllib/atlas/plots.py |
plot_swanson |
1 |
1 |
0 |
0% |
| ibllib/atlas/regions.py |
regions_from_allen_csv |
2 |
2 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
EphysQC.load_data |
14 |
14 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
EphysQC._compute_metrics_array |
8 |
8 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
EphysQC.run |
41 |
41 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
rmsmap |
19 |
19 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
extract_rmsmap |
19 |
19 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
raw_qc_session |
8 |
8 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
validate_ttl_test |
44 |
4 |
0 |
91% |
| ibllib/ephys/ephysqc.py |
validate_ttl_test._single_test |
5 |
2 |
0 |
60% |
| ibllib/ephys/ephysqc.py |
spike_sorting_metrics_ks2 |
18 |
18 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
phy_model_from_ks2_path |
12 |
12 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
qc_fpga_task |
38 |
1 |
0 |
97% |
| ibllib/ephys/spikes.py |
probes_description |
33 |
4 |
0 |
88% |
| ibllib/ephys/spikes.py |
sync_spike_sorting |
19 |
19 |
0 |
0% |
| ibllib/ephys/spikes.py |
sync_spike_sorting._sr |
2 |
2 |
0 |
0% |
| ibllib/ephys/spikes.py |
ks2_to_alf |
3 |
3 |
0 |
0% |
| ibllib/ephys/spikes.py |
ks2_to_tar |
10 |
10 |
0 |
0% |
| ibllib/ephys/spikes.py |
detection |
25 |
5 |
0 |
80% |
| ibllib/ephys/sync_probes.py |
apply_sync |
5 |
1 |
0 |
80% |
| ibllib/ephys/sync_probes.py |
sync |
5 |
1 |
0 |
80% |
| ibllib/ephys/sync_probes.py |
version3A |
28 |
2 |
0 |
93% |
| ibllib/ephys/sync_probes.py |
version3A.get_sync_fronts |
12 |
1 |
0 |
92% |
| ibllib/ephys/sync_probes.py |
version3B |
37 |
6 |
0 |
84% |
| ibllib/ephys/sync_probes.py |
sync_probe_front_times |
49 |
10 |
0 |
80% |
| ibllib/exceptions.py |
IblError.__init__ |
3 |
1 |
0 |
67% |
| ibllib/io/extractors/base.py |
BaseExtractor._save |
23 |
1 |
0 |
96% |
| ibllib/io/extractors/base.py |
BaseExtractor._save._write_to_disk |
17 |
3 |
0 |
82% |
| ibllib/io/extractors/base.py |
BaseExtractor._extract |
1 |
1 |
0 |
0% |
| ibllib/io/extractors/base.py |
BaseBpodTrialsExtractor.extract |
13 |
1 |
0 |
92% |
| ibllib/io/extractors/base.py |
BaseBpodTrialsExtractor.alf_path |
2 |
2 |
0 |
0% |
| ibllib/io/extractors/base.py |
_get_task_types_json_config |
12 |
2 |
0 |
83% |
| ibllib/io/extractors/base.py |
get_task_protocol |
8 |
3 |
0 |
62% |
| ibllib/io/extractors/base.py |
get_task_extractor_type |
11 |
3 |
0 |
73% |
| ibllib/io/extractors/base.py |
get_session_extractor_type |
8 |
1 |
0 |
88% |
| ibllib/io/extractors/base.py |
_get_pipeline_from_task_type |
7 |
1 |
0 |
86% |
| ibllib/io/extractors/biased_trials.py |
ProbaContrasts.get_pregenerated_events |
33 |
1 |
0 |
97% |
| ibllib/io/extractors/biased_trials.py |
extract_all |
15 |
2 |
0 |
87% |
| ibllib/io/extractors/bpod_trials.py |
extract_all |
32 |
4 |
0 |
88% |
| ibllib/io/extractors/bpod_trials.py |
get_bpod_extractor |
14 |
8 |
0 |
43% |
| ibllib/io/extractors/camera.py |
CameraTimestampsFPGA._extract |
40 |
5 |
0 |
88% |
| ibllib/io/extractors/camera.py |
CameraTimestampsCamlog._extract |
12 |
5 |
0 |
58% |
| ibllib/io/extractors/camera.py |
align_with_gpio |
38 |
1 |
0 |
97% |
| ibllib/io/extractors/camera.py |
attribute_times |
16 |
1 |
0 |
94% |
| ibllib/io/extractors/camera.py |
extract_all |
18 |
1 |
0 |
94% |
| ibllib/io/extractors/ephys_fpga.py |
_sync_to_alf |
27 |
6 |
0 |
78% |
| ibllib/io/extractors/ephys_fpga.py |
_assign_events_to_trial |
33 |
2 |
0 |
94% |
| ibllib/io/extractors/ephys_fpga.py |
extract_sync |
23 |
1 |
0 |
96% |
| ibllib/io/extractors/ephys_fpga.py |
get_protocol_period |
9 |
1 |
0 |
89% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials._update_var_names |
27 |
6 |
0 |
78% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials.load_sync |
1 |
1 |
0 |
0% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials._extract |
49 |
4 |
0 |
92% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials.build_trials |
37 |
6 |
23 |
84% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials.get_audio_event_times |
8 |
1 |
0 |
88% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials.get_bpod_event_times |
17 |
1 |
0 |
94% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials._assign_events |
28 |
6 |
6 |
79% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials.sync_bpod_clock |
16 |
3 |
0 |
81% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrialsHabituation._extract |
8 |
3 |
0 |
62% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrialsHabituation.get_bpod_event_times |
9 |
1 |
0 |
89% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrialsHabituation.build_trials |
22 |
3 |
18 |
86% |
| ibllib/io/extractors/ephys_fpga.py |
extract_all |
13 |
2 |
0 |
85% |
| ibllib/io/extractors/ephys_fpga.py |
load_channel_map |
9 |
2 |
0 |
78% |
| ibllib/io/extractors/ephys_passive.py |
_get_passive_spacers |
31 |
17 |
0 |
45% |
| ibllib/io/extractors/ephys_passive.py |
_get_id_raisefall_from_analogttl |
7 |
1 |
0 |
86% |
| ibllib/io/extractors/ephys_passive.py |
_extract_passiveGabor_df |
30 |
7 |
0 |
77% |
| ibllib/io/extractors/ephys_passive.py |
_extract_passiveAudio_intervals |
39 |
20 |
0 |
49% |
| ibllib/io/extractors/ephys_passive.py |
extract_passive_periods |
7 |
1 |
0 |
86% |
| ibllib/io/extractors/ephys_passive.py |
extract_rfmapping |
19 |
3 |
0 |
84% |
| ibllib/io/extractors/ephys_passive.py |
extract_task_replay |
17 |
3 |
0 |
82% |
| ibllib/io/extractors/ephys_passive.py |
extract_replay_debug |
27 |
27 |
0 |
0% |
| ibllib/io/extractors/ephys_passive.py |
PassiveChoiceWorld._extract |
35 |
14 |
0 |
60% |
| ibllib/io/extractors/fibrephotometry.py |
sync_photometry_to_daq |
30 |
4 |
0 |
87% |
| ibllib/io/extractors/fibrephotometry.py |
read_daq_timestamps |
6 |
2 |
0 |
67% |
| ibllib/io/extractors/habituation_trials.py |
HabituationTrials._extract |
49 |
1 |
0 |
98% |
| ibllib/io/extractors/habituation_trials.py |
extract_all |
7 |
7 |
0 |
0% |
| ibllib/io/extractors/mesoscope.py |
TimelineTrials.load_sync |
4 |
1 |
0 |
75% |
| ibllib/io/extractors/mesoscope.py |
TimelineTrials._extract |
4 |
1 |
0 |
75% |
| ibllib/io/extractors/mesoscope.py |
TimelineTrials.build_trials |
71 |
6 |
0 |
92% |
| ibllib/io/extractors/mesoscope.py |
TimelineTrials.get_valve_open_times |
46 |
9 |
0 |
80% |
| ibllib/io/extractors/mesoscope.py |
TimelineTrials._assign_events_audio |
8 |
8 |
9 |
0% |
| ibllib/io/extractors/mesoscope.py |
MesoscopeSyncTimeline.get_bout_edges |
35 |
4 |
0 |
89% |
| ibllib/io/extractors/opto_trials.py |
LaserBool._extract |
18 |
9 |
0 |
50% |
| ibllib/io/extractors/opto_trials.py |
extract_all |
4 |
4 |
0 |
0% |
| ibllib/io/extractors/passive_plotting.py |
plot_rfmapping |
4 |
4 |
0 |
0% |
| ibllib/io/extractors/passive_plotting.py |
plot_sync_channels |
5 |
5 |
0 |
0% |
| ibllib/io/extractors/passive_plotting.py |
plot_passive_periods |
4 |
4 |
0 |
0% |
| ibllib/io/extractors/passive_plotting.py |
plot_gabor_times |
5 |
5 |
0 |
0% |
| ibllib/io/extractors/passive_plotting.py |
plot_valve_times |
5 |
5 |
0 |
0% |
| ibllib/io/extractors/passive_plotting.py |
plot_audio_times |
7 |
7 |
0 |
0% |
| ibllib/io/extractors/passive_plotting.py |
plot_stims_times |
10 |
10 |
0 |
0% |
| ibllib/io/extractors/signatures.py |
spike_sorting_signature |
3 |
3 |
0 |
0% |
| ibllib/io/extractors/signatures.py |
(no function) |
30 |
30 |
0 |
0% |
| ibllib/io/extractors/training_audio.py |
_get_conversion_factor |
7 |
5 |
0 |
29% |
| ibllib/io/extractors/training_audio.py |
welchogram |
22 |
1 |
0 |
95% |
| ibllib/io/extractors/training_audio.py |
extract_sound |
36 |
11 |
0 |
69% |
| ibllib/io/extractors/training_audio.py |
_fix_wav_file |
14 |
14 |
0 |
0% |
| ibllib/io/extractors/training_trials.py |
ContrastLR._extract |
6 |
2 |
0 |
67% |
| ibllib/io/extractors/training_trials.py |
RepNum._extract.get_trial_repeat |
6 |
3 |
0 |
50% |
| ibllib/io/extractors/training_trials.py |
FeedbackTimes.get_feedback_times_lt5 |
8 |
1 |
0 |
88% |
| ibllib/io/extractors/training_trials.py |
FeedbackTimes.get_feedback_times_ge5 |
18 |
2 |
0 |
89% |
| ibllib/io/extractors/training_trials.py |
ItiDuration._extract |
4 |
4 |
0 |
0% |
| ibllib/io/extractors/training_trials.py |
TrialType._extract |
11 |
11 |
0 |
0% |
| ibllib/io/extractors/training_trials.py |
GoCueTimes._extract |
19 |
2 |
0 |
89% |
| ibllib/io/extractors/training_trials.py |
StimOnTimes_deprecated.get_stimOn_times_ge5 |
17 |
2 |
0 |
88% |
| ibllib/io/extractors/training_trials.py |
StimOnTimes_deprecated.get_stimOn_times_lt5 |
30 |
1 |
0 |
97% |
| ibllib/io/extractors/training_trials.py |
extract_all |
11 |
1 |
0 |
91% |
| ibllib/io/extractors/training_wheel.py |
sync_rotary_encoder |
37 |
4 |
0 |
89% |
| ibllib/io/extractors/training_wheel.py |
get_wheel_position |
53 |
15 |
0 |
72% |
| ibllib/io/extractors/training_wheel.py |
get_wheel_position.get_reset_trace_compensation_with_state_machine_times |
26 |
2 |
0 |
92% |
| ibllib/io/extractors/training_wheel.py |
infer_wheel_units |
13 |
1 |
0 |
92% |
| ibllib/io/extractors/training_wheel.py |
extract_wheel_moves |
20 |
5 |
0 |
75% |
| ibllib/io/extractors/training_wheel.py |
extract_all |
1 |
1 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.__init__ |
13 |
1 |
0 |
92% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.align_all_trials |
10 |
10 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.set_roi |
9 |
9 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.set_roi.line_select_callback |
4 |
4 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.load_data |
12 |
12 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment._set_eid_or_path |
12 |
12 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.align_motion |
57 |
24 |
0 |
58% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.plot_alignment |
35 |
6 |
0 |
83% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.plot_alignment.animate |
16 |
3 |
0 |
81% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment.plot_alignment.process_key |
17 |
17 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.__init__ |
12 |
3 |
0 |
75% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.load_data |
35 |
9 |
0 |
74% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.load_data.fix_keys |
5 |
5 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.get_roi_mask |
5 |
1 |
0 |
80% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.find_contaminated_frames |
8 |
8 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.compute_motion_energy |
55 |
55 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.compute_shifts |
28 |
4 |
0 |
86% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.clean_shifts |
17 |
10 |
0 |
41% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.qc_shifts |
19 |
4 |
0 |
79% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.extract_times |
7 |
2 |
0 |
71% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.single_cluster_raster |
44 |
44 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.plot_with_behavior |
61 |
61 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.plot_without_behavior |
33 |
33 |
0 |
0% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession.process |
34 |
8 |
0 |
76% |
| ibllib/io/extractors/widefield.py |
Widefield._extract |
4 |
1 |
0 |
75% |
| ibllib/io/extractors/widefield.py |
Widefield._save |
18 |
2 |
0 |
89% |
| ibllib/io/extractors/widefield.py |
Widefield.sync_timestamps |
38 |
4 |
0 |
89% |
| ibllib/io/extractors/widefield.py |
(no function) |
34 |
4 |
0 |
88% |
| ibllib/io/ffmpeg.py |
compress |
11 |
1 |
0 |
91% |
| ibllib/io/flags.py |
excise_flag_file |
11 |
3 |
0 |
73% |
| ibllib/io/flags.py |
write_flag_file |
22 |
1 |
0 |
95% |
| ibllib/io/flags.py |
create_register_flags |
13 |
13 |
0 |
0% |
| ibllib/io/flags.py |
create_extract_flags |
15 |
15 |
0 |
0% |
| ibllib/io/flags.py |
create_transfer_flags |
1 |
1 |
0 |
0% |
| ibllib/io/flags.py |
create_create_flags |
1 |
1 |
0 |
0% |
| ibllib/io/flags.py |
create_other_flags |
5 |
5 |
0 |
0% |
| ibllib/io/flags.py |
create_compress_video_flags |
8 |
8 |
0 |
0% |
| ibllib/io/flags.py |
create_audio_flags |
10 |
10 |
0 |
0% |
| ibllib/io/flags.py |
create_dlc_flags |
9 |
9 |
0 |
0% |
| ibllib/io/flags.py |
create_flags |
10 |
10 |
0 |
0% |
| ibllib/io/flags.py |
delete_flags |
6 |
6 |
0 |
0% |
| ibllib/io/npy_header.py |
read |
10 |
10 |
0 |
0% |
| ibllib/io/npy_header.py |
(no function) |
3 |
3 |
0 |
0% |
| ibllib/io/raw_daq_loaders.py |
load_raw_daq_tdms |
7 |
1 |
0 |
86% |
| ibllib/io/raw_daq_loaders.py |
load_channels_tdms |
22 |
1 |
0 |
95% |
| ibllib/io/raw_daq_loaders.py |
load_sync_tdms |
25 |
25 |
0 |
0% |
| ibllib/io/raw_daq_loaders.py |
extract_sync_timeline |
46 |
1 |
0 |
98% |
| ibllib/io/raw_data_loaders.py |
load_data |
12 |
2 |
0 |
83% |
| ibllib/io/raw_data_loaders.py |
load_camera_gpio |
24 |
1 |
0 |
96% |
| ibllib/io/raw_data_loaders.py |
_read_settings_json_compatibility_enforced |
48 |
6 |
0 |
88% |
| ibllib/io/raw_data_loaders.py |
load_stim_position_screen |
6 |
6 |
0 |
0% |
| ibllib/io/raw_data_loaders.py |
load_encoder_events |
17 |
2 |
0 |
88% |
| ibllib/io/raw_data_loaders.py |
_load_encoder_ssv_file |
5 |
2 |
0 |
60% |
| ibllib/io/raw_data_loaders.py |
load_encoder_positions |
18 |
1 |
0 |
94% |
| ibllib/io/raw_data_loaders.py |
load_ambient_sensor |
11 |
11 |
0 |
0% |
| ibllib/io/raw_data_loaders.py |
load_mic |
13 |
13 |
0 |
0% |
| ibllib/io/raw_data_loaders.py |
sync_trials_robust |
26 |
1 |
0 |
96% |
| ibllib/io/raw_data_loaders.py |
load_widefield_mmap |
10 |
10 |
0 |
0% |
| ibllib/io/session_params.py |
get_sync_label |
8 |
2 |
0 |
75% |
| ibllib/io/session_params.py |
get_video_compressed |
6 |
1 |
0 |
83% |
| ibllib/io/video.py |
get_video_frames_preload |
28 |
2 |
0 |
93% |
| ibllib/io/video.py |
get_video_meta |
21 |
1 |
0 |
95% |
| ibllib/io/video.py |
assert_valid_label |
8 |
1 |
0 |
88% |
| ibllib/misc/misc.py |
_parametrized |
2 |
2 |
0 |
0% |
| ibllib/misc/misc.py |
_parametrized.layer |
2 |
2 |
0 |
0% |
| ibllib/misc/misc.py |
_parametrized.layer.repl |
1 |
1 |
0 |
0% |
| ibllib/misc/misc.py |
structarr |
4 |
1 |
0 |
75% |
| ibllib/misc/misc.py |
check_nvidia_driver |
5 |
5 |
0 |
0% |
| ibllib/misc/qt.py |
get_main_window |
2 |
2 |
0 |
0% |
| ibllib/misc/qt.py |
create_app |
2 |
2 |
2 |
0% |
| ibllib/misc/qt.py |
require_qt.wrapped |
4 |
4 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
DataHandler.getData |
13 |
13 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
DataHandler.getOutputFiles |
11 |
11 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
DataHandler.uploadData |
4 |
1 |
0 |
75% |
| ibllib/oneibl/data_handlers.py |
ServerGlobusDataHandler.__init__ |
10 |
10 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
ServerGlobusDataHandler.setUp |
27 |
27 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
ServerGlobusDataHandler.uploadData |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
ServerGlobusDataHandler.cleanUp |
2 |
2 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteHttpDataHandler.__init__ |
1 |
1 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteHttpDataHandler.setUp |
2 |
2 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteHttpDataHandler.uploadData |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteAwsDataHandler.__init__ |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteAwsDataHandler.setUp |
2 |
2 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteAwsDataHandler.uploadData |
44 |
44 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteAwsDataHandler.cleanUp |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteGlobusDataHandler.__init__ |
1 |
1 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteGlobusDataHandler.setUp |
1 |
1 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteGlobusDataHandler.uploadData |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
SDSCDataHandler.__init__ |
4 |
4 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
SDSCDataHandler.setUp |
13 |
13 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
SDSCDataHandler.uploadData |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
SDSCDataHandler.cleanUp |
2 |
2 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
PopeyeDataHandler.__init__ |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
PopeyeDataHandler.uploadData |
1 |
1 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
PopeyeDataHandler.cleanUp |
1 |
1 |
0 |
0% |
| ibllib/oneibl/patcher.py |
_run_command |
9 |
9 |
0 |
0% |
| ibllib/oneibl/patcher.py |
Patcher._patch_dataset |
21 |
6 |
0 |
71% |
| ibllib/oneibl/patcher.py |
Patcher.register_datasets |
14 |
14 |
0 |
0% |
| ibllib/oneibl/patcher.py |
Patcher.patch_dataset |
10 |
2 |
0 |
80% |
| ibllib/oneibl/patcher.py |
Patcher.patch_datasets |
14 |
1 |
0 |
93% |
| ibllib/oneibl/patcher.py |
Patcher._scp |
1 |
1 |
0 |
0% |
| ibllib/oneibl/patcher.py |
Patcher._rm |
1 |
1 |
0 |
0% |
| ibllib/oneibl/patcher.py |
GlobusPatcher._scp |
9 |
2 |
0 |
78% |
| ibllib/oneibl/patcher.py |
GlobusPatcher._rm |
7 |
7 |
0 |
0% |
| ibllib/oneibl/patcher.py |
GlobusPatcher.patch_datasets |
19 |
2 |
0 |
89% |
| ibllib/oneibl/patcher.py |
GlobusPatcher.launch_transfers |
10 |
2 |
0 |
80% |
| ibllib/oneibl/patcher.py |
GlobusPatcher.launch_transfers._wait_for_task |
7 |
2 |
0 |
71% |
| ibllib/oneibl/patcher.py |
GlobusPatcher.launch_transfers_secondary |
8 |
3 |
0 |
62% |
| ibllib/oneibl/patcher.py |
IBLGlobusPatcher.__init__ |
2 |
2 |
0 |
0% |
| ibllib/oneibl/patcher.py |
IBLGlobusPatcher.delete_dataset |
42 |
42 |
0 |
0% |
| ibllib/oneibl/patcher.py |
IBLGlobusPatcher.delete_dataset.is_aws |
1 |
1 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SSHPatcher.__init__ |
4 |
4 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SSHPatcher._scp |
3 |
3 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SSHPatcher._rm |
2 |
2 |
0 |
0% |
| ibllib/oneibl/patcher.py |
FTPPatcher.setup |
17 |
1 |
0 |
94% |
| ibllib/oneibl/patcher.py |
FTPPatcher.create_dataset |
13 |
13 |
0 |
0% |
| ibllib/oneibl/patcher.py |
FTPPatcher._scp |
7 |
7 |
0 |
0% |
| ibllib/oneibl/patcher.py |
FTPPatcher.mktree |
7 |
7 |
0 |
0% |
| ibllib/oneibl/patcher.py |
FTPPatcher._rm |
1 |
1 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SDSCPatcher.__init__ |
2 |
2 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SDSCPatcher.patch_datasets |
2 |
2 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SDSCPatcher._scp |
6 |
6 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SDSCPatcher._rm |
1 |
1 |
0 |
0% |
| ibllib/oneibl/registration.py |
register_dataset |
23 |
8 |
0 |
65% |
| ibllib/oneibl/registration.py |
register_dataset._get_protected |
4 |
1 |
0 |
75% |
| ibllib/oneibl/registration.py |
IBLRegistrationClient.register_session |
84 |
10 |
0 |
88% |
| ibllib/oneibl/registration.py |
IBLRegistrationClient._register_bool |
5 |
3 |
0 |
40% |
| ibllib/oneibl/registration.py |
IBLRegistrationClient.find_files |
7 |
2 |
0 |
71% |
| ibllib/oneibl/registration.py |
_alyx_procedure_from_task_type |
10 |
2 |
0 |
80% |
| ibllib/oneibl/registration.py |
rename_files_compatibility |
9 |
5 |
0 |
44% |
| ibllib/oneibl/stream.py |
VideoStreamer.__init__ |
8 |
8 |
0 |
0% |
| ibllib/oneibl/stream.py |
VideoStreamer._url |
3 |
3 |
0 |
0% |
| ibllib/oneibl/stream.py |
VideoStreamer.get_frame |
2 |
2 |
0 |
0% |
| ibllib/oneibl/stream.py |
(no function) |
8 |
8 |
0 |
0% |
| ibllib/pipes/__init__.py |
assign_task |
2 |
2 |
0 |
0% |
| ibllib/pipes/audio_tasks.py |
AudioCompress._run |
7 |
1 |
0 |
86% |
| ibllib/pipes/base_tasks.py |
BehaviourTask.extract_behaviour |
1 |
1 |
0 |
0% |
| ibllib/pipes/base_tasks.py |
BehaviourTask.run_qc |
2 |
2 |
0 |
0% |
| ibllib/pipes/base_tasks.py |
MesoscopeTask.load_sync |
5 |
1 |
0 |
80% |
| ibllib/pipes/base_tasks.py |
RegisterRawDataTask.rename_files |
20 |
1 |
0 |
95% |
| ibllib/pipes/base_tasks.py |
RegisterRawDataTask.register_snapshots |
38 |
2 |
0 |
95% |
| ibllib/pipes/base_tasks.py |
RegisterRawDataTask._run |
16 |
2 |
0 |
88% |
| ibllib/pipes/behavior_tasks.py |
HabituationTrialsBpod._run |
7 |
3 |
0 |
57% |
| ibllib/pipes/behavior_tasks.py |
HabituationTrialsNidq.signature |
3 |
3 |
0 |
0% |
| ibllib/pipes/behavior_tasks.py |
PassiveTaskNidq._run |
4 |
1 |
0 |
75% |
| ibllib/pipes/behavior_tasks.py |
PassiveTaskTimeline._run |
10 |
10 |
0 |
0% |
| ibllib/pipes/behavior_tasks.py |
ChoiceWorldTrialsBpod._run |
14 |
2 |
0 |
86% |
| ibllib/pipes/behavior_tasks.py |
ChoiceWorldTrialsNidq._behaviour_criterion |
11 |
11 |
0 |
0% |
| ibllib/pipes/behavior_tasks.py |
ChoiceWorldTrialsNidq.run_qc |
31 |
10 |
0 |
68% |
| ibllib/pipes/behavior_tasks.py |
ChoiceWorldTrialsNidq._run |
4 |
1 |
0 |
75% |
| ibllib/pipes/behavior_tasks.py |
TrainingStatus._run |
17 |
2 |
0 |
88% |
| ibllib/pipes/dynamic_pipeline.py |
get_acquisition_description |
15 |
3 |
0 |
80% |
| ibllib/pipes/dynamic_pipeline.py |
make_pipeline |
171 |
13 |
0 |
92% |
| ibllib/pipes/dynamic_pipeline.py |
make_pipeline_dict |
5 |
2 |
0 |
60% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.__init__ |
18 |
1 |
0 |
94% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.get_insertion_track |
16 |
2 |
0 |
88% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.get_track_and_feature |
1 |
1 |
0 |
0% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.feature2track_lin |
5 |
1 |
0 |
80% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.get_histology_regions |
25 |
1 |
0 |
96% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.get_nearest_boundary |
42 |
42 |
0 |
0% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.arrange_into_regions |
18 |
18 |
0 |
0% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment.get_perp_vector |
11 |
11 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysPulses._run |
5 |
5 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
RawEphysQC._run |
23 |
23 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysAudio._run |
7 |
1 |
0 |
86% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting._sample2v |
3 |
3 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting._fetch_pykilosort_version |
11 |
11 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting._fetch_pykilosort_run_version |
6 |
6 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting._fetch_ks2_commit_hash |
7 |
7 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting.setUp |
4 |
4 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting._run_pykilosort |
42 |
42 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting._run |
46 |
46 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting.get_signatures |
25 |
1 |
0 |
96% |
| ibllib/pipes/ephys_preprocessing.py |
EphysVideoCompress._run |
6 |
2 |
0 |
67% |
| ibllib/pipes/ephys_preprocessing.py |
EphysVideoSyncQc.get_signatures |
28 |
5 |
0 |
82% |
| ibllib/pipes/ephys_preprocessing.py |
EphysTrials._behaviour_criterion |
5 |
5 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysTrials.run_qc |
28 |
28 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysTrials._run |
5 |
2 |
0 |
60% |
| ibllib/pipes/ephys_preprocessing.py |
EphysCellsQc._compute_cell_qc |
11 |
11 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysCellsQc._label_probe_qc |
18 |
18 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysCellsQc._run |
13 |
13 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysMtscomp._run |
18 |
18 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysDLC._check_dlcenv |
10 |
10 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysDLC._video_intact |
5 |
5 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysDLC._run |
54 |
54 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysPostDLC._run |
85 |
44 |
0 |
48% |
| ibllib/pipes/ephys_preprocessing.py |
EphysPassive._run |
4 |
4 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysExtractionPipeline.__init__ |
19 |
19 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
EphysCompressNP1._run |
24 |
2 |
0 |
92% |
| ibllib/pipes/ephys_tasks.py |
EphysCompressNP21._run |
34 |
11 |
0 |
68% |
| ibllib/pipes/ephys_tasks.py |
EphysCompressNP24._run |
35 |
6 |
0 |
83% |
| ibllib/pipes/ephys_tasks.py |
EphysPulses._run |
11 |
1 |
0 |
91% |
| ibllib/pipes/ephys_tasks.py |
RawEphysQC._run |
23 |
23 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
CellQCMixin.compute_cell_qc |
11 |
11 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
CellQCMixin._label_probe_qc |
17 |
17 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
SpikeSorting._sample2v |
3 |
3 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
SpikeSorting._fetch_iblsorter_version |
15 |
15 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
SpikeSorting._run_iblsort |
44 |
44 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
SpikeSorting._run |
42 |
42 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
EphysCellsQc._run |
13 |
13 |
0 |
0% |
| ibllib/pipes/histology.py |
load_track_csv |
9 |
1 |
0 |
89% |
| ibllib/pipes/histology.py |
get_picked_tracks |
9 |
9 |
0 |
0% |
| ibllib/pipes/histology.py |
get_micro_manipulator_data |
30 |
30 |
0 |
0% |
| ibllib/pipes/histology.py |
plot2d_all |
13 |
13 |
0 |
0% |
| ibllib/pipes/histology.py |
plot3d_all |
14 |
14 |
0 |
0% |
| ibllib/pipes/histology.py |
register_track |
37 |
5 |
0 |
86% |
| ibllib/pipes/histology.py |
register_aligned_track |
21 |
10 |
0 |
52% |
| ibllib/pipes/histology.py |
create_trajectory_dict |
7 |
2 |
0 |
71% |
| ibllib/pipes/histology.py |
create_channel_dict |
4 |
4 |
0 |
0% |
| ibllib/pipes/histology.py |
register_chronic_track_files |
26 |
26 |
0 |
0% |
| ibllib/pipes/histology.py |
register_track_files |
30 |
30 |
0 |
0% |
| ibllib/pipes/histology.py |
detect_missing_histology_tracks |
38 |
38 |
0 |
0% |
| ibllib/pipes/histology.py |
coverage |
40 |
40 |
0 |
0% |
| ibllib/pipes/histology.py |
coverage.crawl_up_from_tip |
1 |
1 |
0 |
0% |
| ibllib/pipes/histology.py |
coverage_grid |
19 |
19 |
0 |
0% |
| ibllib/pipes/histology.py |
coverage_grid._get_scale_and_indices |
9 |
9 |
0 |
0% |
| ibllib/pipes/local_server.py |
_get_pipeline_class |
10 |
10 |
0 |
0% |
| ibllib/pipes/local_server.py |
_run_command |
5 |
5 |
0 |
0% |
| ibllib/pipes/local_server.py |
_get_volume_usage |
6 |
6 |
0 |
0% |
| ibllib/pipes/local_server.py |
report_health |
6 |
6 |
0 |
0% |
| ibllib/pipes/local_server.py |
job_creator |
28 |
3 |
0 |
89% |
| ibllib/pipes/local_server.py |
task_queue |
13 |
4 |
0 |
69% |
| ibllib/pipes/local_server.py |
tasks_runner |
20 |
2 |
0 |
90% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopeCompress._run |
46 |
4 |
0 |
91% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopePreprocess._rename_outputs |
51 |
6 |
0 |
88% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopePreprocess._check_meta_data |
9 |
9 |
0 |
0% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopePreprocess._check_meta_data.equal_dicts |
3 |
3 |
0 |
0% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopePreprocess._consolidate_exptQC |
11 |
11 |
0 |
0% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopePreprocess._create_db |
16 |
1 |
0 |
94% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopePreprocess._run |
47 |
8 |
0 |
83% |
| ibllib/pipes/mesoscope_tasks.py |
in_triangle |
10 |
10 |
0 |
0% |
| ibllib/pipes/mesoscope_tasks.py |
in_triangle.area |
1 |
1 |
0 |
0% |
| ibllib/pipes/mesoscope_tasks.py |
find_triangle |
7 |
7 |
0 |
0% |
| ibllib/pipes/mesoscope_tasks.py |
_nearest_neighbour_1d |
9 |
9 |
0 |
0% |
| ibllib/pipes/mesoscope_tasks.py |
_update_points |
25 |
25 |
0 |
0% |
| ibllib/pipes/misc.py |
subjects_data_folder |
13 |
3 |
0 |
77% |
| ibllib/pipes/misc.py |
cli_ask_options |
8 |
8 |
0 |
0% |
| ibllib/pipes/misc.py |
behavior_exists |
6 |
1 |
0 |
83% |
| ibllib/pipes/misc.py |
rename_session |
27 |
7 |
0 |
74% |
| ibllib/pipes/misc.py |
copy_with_check |
6 |
6 |
0 |
0% |
| ibllib/pipes/misc.py |
transfer_session_folders |
58 |
13 |
0 |
78% |
| ibllib/pipes/misc.py |
transfer_session_folders._remote_session_picker |
14 |
5 |
0 |
64% |
| ibllib/pipes/misc.py |
transfer_folder |
17 |
17 |
0 |
0% |
| ibllib/pipes/misc.py |
load_params_dict |
6 |
6 |
0 |
0% |
| ibllib/pipes/misc.py |
load_videopc_params |
4 |
4 |
0 |
0% |
| ibllib/pipes/misc.py |
load_ephyspc_params |
3 |
3 |
0 |
0% |
| ibllib/pipes/misc.py |
create_videopc_params |
22 |
22 |
0 |
0% |
| ibllib/pipes/misc.py |
create_ephyspc_params |
20 |
20 |
0 |
0% |
| ibllib/pipes/misc.py |
rdiff_install |
31 |
27 |
0 |
13% |
| ibllib/pipes/misc.py |
rsync_paths |
29 |
10 |
0 |
66% |
| ibllib/pipes/misc.py |
confirm_ephys_remote_folder |
61 |
61 |
0 |
0% |
| ibllib/pipes/misc.py |
create_alyx_probe_insertions |
25 |
8 |
0 |
68% |
| ibllib/pipes/misc.py |
check_create_raw_session_flag |
41 |
3 |
0 |
93% |
| ibllib/pipes/misc.py |
check_create_raw_session_flag.check_status |
5 |
1 |
0 |
80% |
| ibllib/pipes/misc.py |
rename_ephys_files |
15 |
1 |
0 |
93% |
| ibllib/pipes/misc.py |
create_custom_ephys_wirings |
18 |
18 |
0 |
0% |
| ibllib/pipes/misc.py |
get_iblscripts_folder |
1 |
1 |
0 |
0% |
| ibllib/pipes/misc.py |
copy_wiring_files |
23 |
23 |
0 |
0% |
| ibllib/pipes/misc.py |
multi_parts_flags_creation |
26 |
2 |
0 |
92% |
| ibllib/pipes/misc.py |
WindowsInhibitor._set_thread_execution_state |
3 |
3 |
0 |
0% |
| ibllib/pipes/misc.py |
WindowsInhibitor.inhibit |
4 |
4 |
0 |
0% |
| ibllib/pipes/misc.py |
WindowsInhibitor.uninhibit |
4 |
4 |
0 |
0% |
| ibllib/pipes/misc.py |
sleepless.inner |
6 |
2 |
0 |
67% |
| ibllib/pipes/photometry_tasks.py |
FibrePhotometryExtractionPipeline.__init__ |
11 |
11 |
0 |
0% |
| ibllib/pipes/purge_rig_data.py |
session_name |
1 |
1 |
0 |
0% |
| ibllib/pipes/purge_rig_data.py |
purge_local_data |
30 |
30 |
0 |
0% |
| ibllib/pipes/purge_rig_data.py |
(no function) |
15 |
15 |
0 |
0% |
| ibllib/pipes/remote_server.py |
_run_command |
5 |
5 |
0 |
0% |
| ibllib/pipes/remote_server.py |
job_transfer_ks2 |
34 |
34 |
0 |
0% |
| ibllib/pipes/remote_server.py |
job_transfer_ks2._get_volume_usage_percentage |
5 |
5 |
0 |
0% |
| ibllib/pipes/remote_server.py |
job_run_ks2 |
20 |
20 |
0 |
0% |
| ibllib/pipes/remote_server.py |
(no function) |
17 |
17 |
0 |
0% |
| ibllib/pipes/scan_fix_passive_files.py |
find_pairs |
24 |
2 |
0 |
92% |
| ibllib/pipes/sdsc_tasks.py |
RegisterSpikeSortingSDSC.signature |
2 |
2 |
0 |
0% |
| ibllib/pipes/sdsc_tasks.py |
RegisterSpikeSortingSDSC.__init__ |
3 |
3 |
0 |
0% |
| ibllib/pipes/sdsc_tasks.py |
RegisterSpikeSortingSDSC._run |
10 |
10 |
0 |
0% |
| ibllib/pipes/sdsc_tasks.py |
RegisterSpikeSortingSDSC._run._fs |
2 |
2 |
0 |
0% |
| ibllib/pipes/sdsc_tasks.py |
(no function) |
9 |
9 |
0 |
0% |
| ibllib/pipes/sync_tasks.py |
SyncMtscomp._run |
43 |
3 |
0 |
93% |
| ibllib/pipes/sync_tasks.py |
SyncPulses._run |
6 |
1 |
0 |
83% |
| ibllib/pipes/tasks.py |
Task.run |
58 |
3 |
0 |
95% |
| ibllib/pipes/tasks.py |
Task.register_images |
7 |
6 |
0 |
14% |
| ibllib/pipes/tasks.py |
Task.rerun |
1 |
1 |
0 |
0% |
| ibllib/pipes/tasks.py |
Task.setUp |
22 |
5 |
0 |
77% |
| ibllib/pipes/tasks.py |
Task.assert_expected_outputs |
9 |
4 |
0 |
56% |
| ibllib/pipes/tasks.py |
Task.assert_expected_inputs |
5 |
1 |
0 |
80% |
| ibllib/pipes/tasks.py |
Task.get_data_handler |
18 |
11 |
0 |
39% |
| ibllib/pipes/tasks.py |
Task._creates_lock |
6 |
1 |
0 |
83% |
| ibllib/pipes/tasks.py |
Pipeline.__init__ |
13 |
1 |
0 |
92% |
| ibllib/pipes/tasks.py |
Pipeline.make_graph |
19 |
1 |
0 |
95% |
| ibllib/pipes/tasks.py |
Pipeline.create_alyx_tasks |
37 |
12 |
0 |
68% |
| ibllib/pipes/tasks.py |
Pipeline.create_tasks_list_from_pipeline |
10 |
1 |
0 |
90% |
| ibllib/pipes/tasks.py |
Pipeline.run |
13 |
2 |
0 |
85% |
| ibllib/pipes/tasks.py |
Pipeline.rerun |
1 |
1 |
0 |
0% |
| ibllib/pipes/tasks.py |
run_alyx_task |
46 |
4 |
0 |
91% |
| ibllib/pipes/training_preprocessing.py |
TrainingRegisterRaw._run |
1 |
1 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingTrials.run_qc |
14 |
14 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingTrials._run |
4 |
1 |
0 |
75% |
| ibllib/pipes/training_preprocessing.py |
TrainingAudio._run |
1 |
1 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingDLC._run |
1 |
1 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingStatus._run |
15 |
15 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingExtractionPipeline.__init__ |
11 |
11 |
0 |
0% |
| ibllib/pipes/training_status.py |
get_training_table_from_aws |
14 |
4 |
0 |
71% |
| ibllib/pipes/training_status.py |
upload_training_table_to_aws |
12 |
2 |
0 |
83% |
| ibllib/pipes/training_status.py |
load_trials |
53 |
10 |
0 |
81% |
| ibllib/pipes/training_status.py |
get_latest_training_information |
40 |
7 |
0 |
82% |
| ibllib/pipes/training_status.py |
compute_training_status |
32 |
1 |
0 |
97% |
| ibllib/pipes/training_status.py |
compute_session_duration_delay_location |
20 |
5 |
0 |
75% |
| ibllib/pipes/training_status.py |
get_data_collection |
21 |
2 |
0 |
90% |
| ibllib/pipes/training_status.py |
get_sess_dict |
34 |
12 |
0 |
65% |
| ibllib/pipes/training_status.py |
get_training_info_for_session |
76 |
15 |
0 |
80% |
| ibllib/pipes/training_status.py |
add_training_lines |
8 |
1 |
0 |
88% |
| ibllib/pipes/training_status.py |
make_plots |
34 |
1 |
0 |
97% |
| ibllib/pipes/transfer_rig_data.py |
main |
39 |
1 |
0 |
97% |
| ibllib/pipes/transfer_rig_data.py |
(no function) |
17 |
5 |
0 |
71% |
| ibllib/pipes/video_tasks.py |
VideoRegisterRaw.assert_expected_outputs |
10 |
10 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
VideoConvert._run |
25 |
3 |
0 |
88% |
| ibllib/pipes/video_tasks.py |
VideoSyncQcCamlog._run |
8 |
1 |
0 |
88% |
| ibllib/pipes/video_tasks.py |
VideoSyncQcNidq._run |
12 |
2 |
0 |
83% |
| ibllib/pipes/video_tasks.py |
DLC._check_dlcenv |
10 |
10 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
DLC._video_intact |
5 |
5 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
DLC._run |
59 |
59 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
EphysPostDLC.signature |
1 |
1 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
EphysPostDLC._run |
85 |
85 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
LightningPose._video_intact |
5 |
5 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
LightningPose._check_env |
9 |
9 |
0 |
0% |
| ibllib/pipes/video_tasks.py |
LightningPose._run |
37 |
27 |
0 |
27% |
| ibllib/pipes/widefield_tasks.py |
WidefieldCompress._run |
13 |
1 |
0 |
92% |
| ibllib/pipes/widefield_tasks.py |
WidefieldPreprocess._run |
14 |
10 |
0 |
29% |
| ibllib/pipes/widefield_tasks.py |
WidefieldFOV.signature |
2 |
2 |
0 |
0% |
| ibllib/pipes/widefield_tasks.py |
WidefieldFOV._run |
2 |
2 |
0 |
0% |
| ibllib/pipes/widefield_tasks.py |
(no function) |
42 |
2 |
0 |
95% |
| ibllib/plots/figures.py |
set_axis_label_size |
8 |
8 |
0 |
0% |
| ibllib/plots/figures.py |
remove_axis_outline |
6 |
6 |
0 |
0% |
| ibllib/plots/figures.py |
BehaviourPlots.signature |
2 |
2 |
0 |
0% |
| ibllib/plots/figures.py |
BehaviourPlots.__init__ |
7 |
7 |
0 |
0% |
| ibllib/plots/figures.py |
BehaviourPlots._run |
24 |
24 |
0 |
0% |
| ibllib/plots/figures.py |
HistologySlices._run |
22 |
22 |
0 |
0% |
| ibllib/plots/figures.py |
HistologySlices.get_probe_signature |
3 |
3 |
0 |
0% |
| ibllib/plots/figures.py |
LfpPlots._run |
30 |
30 |
0 |
0% |
| ibllib/plots/figures.py |
LfpPlots.get_probe_signature |
3 |
3 |
0 |
0% |
| ibllib/plots/figures.py |
ApPlots._run |
18 |
18 |
0 |
0% |
| ibllib/plots/figures.py |
ApPlots.get_probe_signature |
3 |
3 |
0 |
0% |
| ibllib/plots/figures.py |
SpikeSorting._run |
24 |
24 |
0 |
0% |
| ibllib/plots/figures.py |
SpikeSorting._run.plot_driftmap |
17 |
17 |
0 |
0% |
| ibllib/plots/figures.py |
SpikeSorting.get_probe_signature |
3 |
3 |
0 |
0% |
| ibllib/plots/figures.py |
SpikeSorting.get_signatures |
10 |
10 |
0 |
0% |
| ibllib/plots/figures.py |
BadChannelsAp.get_probe_signature |
4 |
4 |
0 |
0% |
| ibllib/plots/figures.py |
BadChannelsAp._run |
38 |
38 |
0 |
0% |
| ibllib/plots/figures.py |
ephys_bad_channels |
98 |
98 |
0 |
0% |
| ibllib/plots/figures.py |
ephys_bad_channels.gain2level |
1 |
1 |
0 |
0% |
| ibllib/plots/figures.py |
raw_destripe |
31 |
31 |
0 |
0% |
| ibllib/plots/figures.py |
dlc_qc_plot |
113 |
90 |
0 |
20% |
| ibllib/plots/misc.py |
wiggle |
21 |
21 |
0 |
0% |
| ibllib/plots/misc.py |
wiggle.insert_zeros |
15 |
15 |
0 |
0% |
| ibllib/plots/misc.py |
Density.__init__ |
24 |
24 |
0 |
0% |
| ibllib/plots/misc.py |
Density.on_key_press |
6 |
6 |
0 |
0% |
| ibllib/plots/misc.py |
Traces.__init__ |
15 |
15 |
0 |
0% |
| ibllib/plots/misc.py |
Traces.on_key_press |
8 |
8 |
0 |
0% |
| ibllib/plots/misc.py |
squares |
10 |
1 |
0 |
90% |
| ibllib/plots/misc.py |
vertical_lines |
9 |
1 |
0 |
89% |
| ibllib/plots/misc.py |
spectrum |
22 |
22 |
0 |
0% |
| ibllib/plots/misc.py |
color_cycle |
4 |
4 |
0 |
0% |
| ibllib/plots/misc.py |
(no function) |
19 |
3 |
0 |
84% |
| ibllib/plots/snapshot.py |
ReportSnapshot._run |
1 |
1 |
0 |
0% |
| ibllib/plots/snapshot.py |
ReportSnapshot.register_images |
12 |
2 |
0 |
83% |
| ibllib/plots/snapshot.py |
ReportSnapshotProbe.__init__ |
15 |
15 |
0 |
0% |
| ibllib/plots/snapshot.py |
ReportSnapshotProbe.pid_label |
1 |
1 |
0 |
0% |
| ibllib/plots/snapshot.py |
ReportSnapshotProbe.get_probe_signature |
1 |
1 |
0 |
0% |
| ibllib/plots/snapshot.py |
ReportSnapshotProbe.get_histology_status |
12 |
12 |
0 |
0% |
| ibllib/plots/snapshot.py |
ReportSnapshotProbe.get_channels |
35 |
35 |
0 |
0% |
| ibllib/plots/snapshot.py |
ReportSnapshotProbe.register_images |
1 |
1 |
0 |
0% |
| ibllib/plots/snapshot.py |
Snapshot.plot |
1 |
1 |
0 |
0% |
| ibllib/plots/snapshot.py |
Snapshot.generate_image |
5 |
1 |
0 |
80% |
| ibllib/plots/snapshot.py |
Snapshot.register_image |
16 |
1 |
0 |
94% |
| ibllib/qc/alignment_qc.py |
AlignmentQC.load_data |
28 |
4 |
0 |
86% |
| ibllib/qc/alignment_qc.py |
AlignmentQC.run |
20 |
5 |
0 |
75% |
| ibllib/qc/alignment_qc.py |
AlignmentQC.resolve_manual |
19 |
3 |
0 |
84% |
| ibllib/qc/alignment_qc.py |
AlignmentQC.upload_channels |
51 |
30 |
0 |
41% |
| ibllib/qc/alignment_qc.py |
AlignmentQC.update_experimenter_evaluation |
14 |
14 |
0 |
0% |
| ibllib/qc/alignment_qc.py |
get_aligned_channels |
19 |
19 |
0 |
0% |
| ibllib/qc/base.py |
QC.run |
1 |
1 |
0 |
0% |
| ibllib/qc/base.py |
QC.load_data |
1 |
1 |
0 |
0% |
| ibllib/qc/base.py |
QC._confirm_endpoint_id |
16 |
3 |
0 |
81% |
| ibllib/qc/base.py |
QC.update |
18 |
2 |
0 |
89% |
| ibllib/qc/base.py |
QC.update_extended_qc |
21 |
2 |
0 |
90% |
| ibllib/qc/camera.py |
CameraQC.__init__ |
26 |
6 |
0 |
77% |
| ibllib/qc/camera.py |
CameraQC.load_data |
68 |
10 |
0 |
85% |
| ibllib/qc/camera.py |
CameraQC.load_video_data |
8 |
3 |
0 |
62% |
| ibllib/qc/camera.py |
CameraQC.get_active_wheel_period |
15 |
4 |
0 |
73% |
| ibllib/qc/camera.py |
CameraQC.ensure_required_data |
47 |
19 |
0 |
60% |
| ibllib/qc/camera.py |
CameraQC._set_sync |
9 |
3 |
0 |
67% |
| ibllib/qc/camera.py |
CameraQC._update_meta_from_session_params |
13 |
2 |
0 |
85% |
| ibllib/qc/camera.py |
CameraQC.run |
20 |
2 |
0 |
90% |
| ibllib/qc/camera.py |
CameraQC._remove_check |
7 |
5 |
0 |
29% |
| ibllib/qc/camera.py |
CameraQC.check_brightness |
34 |
1 |
0 |
97% |
| ibllib/qc/camera.py |
CameraQC.check_wheel_alignment |
22 |
2 |
0 |
91% |
| ibllib/qc/camera.py |
CameraQCCamlog.__init__ |
3 |
3 |
0 |
0% |
| ibllib/qc/camera.py |
CameraQCCamlog.load_data |
51 |
51 |
0 |
0% |
| ibllib/qc/camera.py |
CameraQCCamlog.ensure_required_data |
25 |
25 |
0 |
0% |
| ibllib/qc/camera.py |
CameraQCCamlog.check_camera_times |
5 |
5 |
0 |
0% |
| ibllib/qc/camera.py |
get_video_collection |
7 |
1 |
0 |
86% |
| ibllib/qc/camera.py |
(no function) |
75 |
2 |
0 |
97% |
| ibllib/qc/critical_reasons.py |
main_gui |
12 |
1 |
0 |
92% |
| ibllib/qc/critical_reasons.py |
main |
13 |
2 |
0 |
85% |
| ibllib/qc/critical_reasons.py |
Note.extra_prompt |
1 |
1 |
0 |
0% |
| ibllib/qc/critical_reasons.py |
Note.note_title |
1 |
1 |
0 |
0% |
| ibllib/qc/critical_reasons.py |
Note.__init__ |
10 |
1 |
0 |
90% |
| ibllib/qc/critical_reasons.py |
Note.get_content_type |
6 |
6 |
0 |
0% |
| ibllib/qc/critical_reasons.py |
Note.describe |
2 |
2 |
0 |
0% |
| ibllib/qc/critical_reasons.py |
Note._map_num_to_description |
7 |
2 |
0 |
71% |
| ibllib/qc/critical_reasons.py |
Note.reasons_prompt |
12 |
4 |
0 |
67% |
| ibllib/qc/critical_reasons.py |
CriticalNote.update_existing_note |
9 |
1 |
0 |
89% |
| ibllib/qc/critical_reasons.py |
CriticalNote.delete_note_prompt |
6 |
2 |
0 |
67% |
| ibllib/qc/critical_reasons.py |
SignOffNote.sign_off |
7 |
1 |
0 |
86% |
| ibllib/qc/critical_reasons.py |
SignOffNote.update_existing_note |
5 |
1 |
0 |
80% |
| ibllib/qc/critical_reasons.py |
SignOffNote.get_datetime_key |
6 |
2 |
0 |
67% |
| ibllib/qc/dlc.py |
DlcQC.load_data |
23 |
20 |
0 |
13% |
| ibllib/qc/dlc.py |
DlcQC.run |
15 |
11 |
0 |
27% |
| ibllib/qc/dlc.py |
DlcQC.run.is_metric |
1 |
1 |
0 |
0% |
| ibllib/qc/dlc.py |
DlcQC.check_pupil_diameter_snr |
10 |
1 |
0 |
90% |
| ibllib/qc/dlc.py |
run_all_qc |
6 |
6 |
0 |
0% |
| ibllib/qc/qcplots.py |
plot_results |
37 |
37 |
0 |
0% |
| ibllib/qc/qcplots.py |
plot_results.get_trial_level_failed |
2 |
2 |
0 |
0% |
| ibllib/qc/qcplots.py |
(no function) |
8 |
8 |
0 |
0% |
| ibllib/qc/task_extractors.py |
TaskQCExtractor.__init__ |
21 |
1 |
0 |
95% |
| ibllib/qc/task_extractors.py |
TaskQCExtractor._ensure_required_data |
19 |
3 |
0 |
84% |
| ibllib/qc/task_extractors.py |
TaskQCExtractor.load_raw_data |
14 |
7 |
0 |
50% |
| ibllib/qc/task_extractors.py |
TaskQCExtractor.extract_data |
20 |
9 |
0 |
55% |
| ibllib/qc/task_metrics.py |
compute_session_status_from_dict |
5 |
1 |
0 |
80% |
| ibllib/qc/task_metrics.py |
TaskQC.compute |
11 |
4 |
0 |
64% |
| ibllib/qc/task_metrics.py |
HabituationQC.compute |
59 |
5 |
0 |
92% |
| ibllib/qc/task_metrics.py |
_wheel_move_during_closed_loop |
21 |
2 |
0 |
90% |
| ibllib/qc/task_metrics.py |
check_stimulus_move_before_goCue |
13 |
2 |
0 |
85% |
| ibllib/qc/task_metrics.py |
check_audio_pre_trial |
10 |
2 |
0 |
80% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.__init__ |
2 |
2 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.setDataFrame |
3 |
3 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.dataFrame |
1 |
1 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.headerData |
5 |
5 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.rowCount |
3 |
3 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.columnCount |
3 |
3 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.data |
13 |
13 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.roleNames |
2 |
2 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel.sort |
5 |
5 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
PlotCanvas.__init__ |
9 |
9 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
PlotWindow.__init__ |
6 |
6 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
GraphWindow.__init__ |
16 |
16 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
GraphWindow.load_file |
4 |
4 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
GraphWindow.update_df |
3 |
3 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
GraphWindow.tv_double_clicked |
15 |
15 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
viewqc |
7 |
7 |
0 |
0% |
| ibllib/qc/task_qc_viewer/task_qc.py |
QcFrame.__init__ |
21 |
2 |
0 |
90% |
| ibllib/qc/task_qc_viewer/task_qc.py |
QcFrame.n_trials |
1 |
1 |
0 |
0% |
| ibllib/qc/task_qc_viewer/task_qc.py |
QcFrame.create_plots |
34 |
5 |
0 |
85% |
| ibllib/qc/task_qc_viewer/task_qc.py |
show_session_task_qc |
37 |
3 |
0 |
92% |
| ibllib/qc/task_qc_viewer/task_qc.py |
qc_gui_cli |
6 |
6 |
0 |
0% |
| ibllib/qc/task_qc_viewer/task_qc.py |
(no function) |
39 |
1 |
0 |
97% |
| ibllib/tests/__init__.py |
_get_test_db |
5 |
2 |
0 |
60% |
| ibllib/tests/fixtures/utils.py |
create_fake_raw_video_data_folder |
19 |
1 |
0 |
95% |
| ibllib/tests/fixtures/utils.py |
create_fake_raw_behavior_data_folder |
29 |
2 |
0 |
93% |
| ibllib/tests/fixtures/utils.py |
register_new_session |
8 |
2 |
0 |
75% |
| ibllib/time.py |
isostr2date |
8 |
1 |
0 |
88% |