| brainbox/__init__.py |
(no class) |
5 |
2 |
0 |
60% |
| brainbox/atlas.py |
(no class) |
6 |
6 |
0 |
0% |
| brainbox/behavior/wheel.py |
(no class) |
29 |
2 |
0 |
93% |
| brainbox/core.py |
TimeSeries |
12 |
3 |
0 |
75% |
| brainbox/io/one.py |
SpikeSortingLoader |
211 |
84 |
0 |
60% |
| brainbox/io/one.py |
SessionLoader |
102 |
27 |
0 |
74% |
| brainbox/io/one.py |
EphysSessionLoader |
17 |
17 |
0 |
0% |
| brainbox/io/spikeglx.py |
Streamer |
85 |
9 |
0 |
89% |
| brainbox/lfp.py |
(no class) |
5 |
5 |
0 |
0% |
| brainbox/plot_base.py |
ImagePlot |
24 |
2 |
0 |
92% |
| brainbox/plot_base.py |
ProbePlot |
29 |
3 |
0 |
90% |
| brainbox/plot_base.py |
ScatterPlot |
28 |
2 |
0 |
93% |
| brainbox/population/cca.py |
(no class) |
70 |
48 |
0 |
31% |
| brainbox/quality/lfp_qc.py |
(no class) |
21 |
21 |
0 |
0% |
| brainbox/quality/permutation_test.py |
(no class) |
13 |
13 |
0 |
0% |
| brainbox/spike_features.py |
(no class) |
3 |
3 |
0 |
0% |
| brainbox/task/_knockoff.py |
RegressionFDR |
39 |
39 |
0 |
0% |
| brainbox/task/_statsmodels.py |
NullDistribution |
37 |
37 |
0 |
0% |
| ibllib/__init__.py |
(no class) |
9 |
1 |
0 |
89% |
| ibllib/atlas/genes.py |
(no class) |
4 |
4 |
0 |
0% |
| ibllib/ephys/ephysqc.py |
EphysQC |
84 |
63 |
0 |
25% |
| ibllib/exceptions.py |
IblError |
4 |
1 |
0 |
75% |
| ibllib/io/extractors/base.py |
BaseExtractor |
45 |
5 |
0 |
89% |
| ibllib/io/extractors/base.py |
BaseBpodTrialsExtractor |
15 |
3 |
0 |
80% |
| ibllib/io/extractors/biased_trials.py |
ProbaContrasts |
35 |
1 |
0 |
97% |
| ibllib/io/extractors/camera.py |
CameraTimestampsFPGA |
47 |
5 |
0 |
89% |
| ibllib/io/extractors/camera.py |
CameraTimestampsCamlog |
19 |
5 |
0 |
74% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrials |
201 |
28 |
29 |
86% |
| ibllib/io/extractors/ephys_fpga.py |
FpgaTrialsHabituation |
39 |
7 |
18 |
82% |
| ibllib/io/extractors/ephys_passive.py |
PassiveChoiceWorld |
35 |
14 |
0 |
60% |
| ibllib/io/extractors/habituation_trials.py |
HabituationTrials |
52 |
1 |
0 |
98% |
| ibllib/io/extractors/mesoscope.py |
TimelineTrials |
166 |
25 |
9 |
85% |
| ibllib/io/extractors/mesoscope.py |
MesoscopeSyncTimeline |
82 |
4 |
0 |
95% |
| ibllib/io/extractors/opto_trials.py |
LaserBool |
18 |
9 |
0 |
50% |
| ibllib/io/extractors/signatures.py |
(no class) |
30 |
30 |
0 |
0% |
| ibllib/io/extractors/training_trials.py |
ContrastLR |
6 |
2 |
0 |
67% |
| ibllib/io/extractors/training_trials.py |
RepNum |
10 |
3 |
0 |
70% |
| ibllib/io/extractors/training_trials.py |
FeedbackTimes |
30 |
3 |
0 |
90% |
| ibllib/io/extractors/training_trials.py |
ItiDuration |
4 |
4 |
0 |
0% |
| ibllib/io/extractors/training_trials.py |
TrialType |
11 |
11 |
0 |
0% |
| ibllib/io/extractors/training_trials.py |
GoCueTimes |
19 |
2 |
0 |
89% |
| ibllib/io/extractors/training_trials.py |
StimOnTimes_deprecated |
52 |
3 |
0 |
94% |
| ibllib/io/extractors/video_motion.py |
MotionAlignment |
202 |
98 |
0 |
51% |
| ibllib/io/extractors/video_motion.py |
MotionAlignmentFullSession |
363 |
247 |
0 |
32% |
| ibllib/io/extractors/widefield.py |
Widefield |
85 |
7 |
0 |
92% |
| ibllib/io/extractors/widefield.py |
(no class) |
34 |
4 |
0 |
88% |
| ibllib/io/npy_header.py |
(no class) |
3 |
3 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
DataHandler |
34 |
25 |
0 |
26% |
| ibllib/oneibl/data_handlers.py |
ServerGlobusDataHandler |
42 |
42 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteHttpDataHandler |
6 |
6 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteAwsDataHandler |
52 |
52 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
RemoteGlobusDataHandler |
5 |
5 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
SDSCDataHandler |
22 |
22 |
0 |
0% |
| ibllib/oneibl/data_handlers.py |
PopeyeDataHandler |
5 |
5 |
0 |
0% |
| ibllib/oneibl/patcher.py |
Patcher |
64 |
25 |
0 |
61% |
| ibllib/oneibl/patcher.py |
GlobusPatcher |
75 |
18 |
0 |
76% |
| ibllib/oneibl/patcher.py |
IBLGlobusPatcher |
45 |
45 |
0 |
0% |
| ibllib/oneibl/patcher.py |
SSHPatcher |
9 |
9 |
0 |
0% |
| ibllib/oneibl/patcher.py |
FTPPatcher |
54 |
29 |
0 |
46% |
| ibllib/oneibl/patcher.py |
SDSCPatcher |
11 |
11 |
0 |
0% |
| ibllib/oneibl/registration.py |
IBLRegistrationClient |
99 |
15 |
0 |
85% |
| ibllib/oneibl/stream.py |
VideoStreamer |
13 |
13 |
0 |
0% |
| ibllib/oneibl/stream.py |
(no class) |
8 |
8 |
0 |
0% |
| ibllib/pipes/audio_tasks.py |
AudioCompress |
9 |
1 |
0 |
89% |
| ibllib/pipes/base_tasks.py |
BehaviourTask |
34 |
3 |
0 |
91% |
| ibllib/pipes/base_tasks.py |
MesoscopeTask |
11 |
1 |
0 |
91% |
| ibllib/pipes/base_tasks.py |
RegisterRawDataTask |
78 |
5 |
0 |
94% |
| ibllib/pipes/behavior_tasks.py |
HabituationTrialsBpod |
22 |
3 |
0 |
86% |
| ibllib/pipes/behavior_tasks.py |
HabituationTrialsNidq |
11 |
3 |
0 |
73% |
| ibllib/pipes/behavior_tasks.py |
PassiveTaskNidq |
6 |
1 |
0 |
83% |
| ibllib/pipes/behavior_tasks.py |
PassiveTaskTimeline |
12 |
10 |
0 |
17% |
| ibllib/pipes/behavior_tasks.py |
ChoiceWorldTrialsBpod |
35 |
2 |
0 |
94% |
| ibllib/pipes/behavior_tasks.py |
ChoiceWorldTrialsNidq |
53 |
22 |
0 |
58% |
| ibllib/pipes/behavior_tasks.py |
TrainingStatus |
19 |
2 |
0 |
89% |
| ibllib/pipes/ephys_alignment.py |
EphysAlignment |
184 |
77 |
0 |
58% |
| ibllib/pipes/ephys_preprocessing.py |
EphysPulses |
22 |
5 |
0 |
77% |
| ibllib/pipes/ephys_preprocessing.py |
RawEphysQC |
47 |
23 |
0 |
51% |
| ibllib/pipes/ephys_preprocessing.py |
EphysAudio |
7 |
1 |
0 |
86% |
| ibllib/pipes/ephys_preprocessing.py |
SpikeSorting |
154 |
120 |
0 |
22% |
| ibllib/pipes/ephys_preprocessing.py |
EphysVideoCompress |
18 |
2 |
0 |
89% |
| ibllib/pipes/ephys_preprocessing.py |
EphysVideoSyncQc |
35 |
5 |
0 |
86% |
| ibllib/pipes/ephys_preprocessing.py |
EphysTrials |
52 |
35 |
0 |
33% |
| ibllib/pipes/ephys_preprocessing.py |
EphysCellsQc |
54 |
42 |
0 |
22% |
| ibllib/pipes/ephys_preprocessing.py |
EphysMtscomp |
36 |
18 |
0 |
50% |
| ibllib/pipes/ephys_preprocessing.py |
EphysDLC |
69 |
69 |
0 |
0% |
| ibllib/pipes/ephys_preprocessing.py |
EphysPostDLC |
85 |
44 |
0 |
48% |
| ibllib/pipes/ephys_preprocessing.py |
EphysPassive |
16 |
4 |
0 |
75% |
| ibllib/pipes/ephys_preprocessing.py |
EphysExtractionPipeline |
19 |
19 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
EphysCompressNP1 |
26 |
2 |
0 |
92% |
| ibllib/pipes/ephys_tasks.py |
EphysCompressNP21 |
36 |
11 |
0 |
69% |
| ibllib/pipes/ephys_tasks.py |
EphysCompressNP24 |
43 |
6 |
0 |
86% |
| ibllib/pipes/ephys_tasks.py |
EphysPulses |
18 |
1 |
0 |
94% |
| ibllib/pipes/ephys_tasks.py |
RawEphysQC |
25 |
23 |
0 |
8% |
| ibllib/pipes/ephys_tasks.py |
CellQCMixin |
28 |
28 |
0 |
0% |
| ibllib/pipes/ephys_tasks.py |
SpikeSorting |
112 |
104 |
0 |
7% |
| ibllib/pipes/ephys_tasks.py |
EphysCellsQc |
15 |
13 |
0 |
13% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopeCompress |
53 |
4 |
0 |
92% |
| ibllib/pipes/mesoscope_tasks.py |
MesoscopePreprocess |
159 |
38 |
0 |
76% |
| ibllib/pipes/misc.py |
WindowsInhibitor |
11 |
11 |
0 |
0% |
| ibllib/pipes/photometry_tasks.py |
FibrePhotometryExtractionPipeline |
11 |
11 |
0 |
0% |
| ibllib/pipes/purge_rig_data.py |
(no class) |
15 |
15 |
0 |
0% |
| ibllib/pipes/remote_server.py |
(no class) |
17 |
17 |
0 |
0% |
| ibllib/pipes/sdsc_tasks.py |
RegisterSpikeSortingSDSC |
17 |
17 |
0 |
0% |
| ibllib/pipes/sdsc_tasks.py |
(no class) |
9 |
9 |
0 |
0% |
| ibllib/pipes/sync_tasks.py |
SyncMtscomp |
45 |
3 |
0 |
93% |
| ibllib/pipes/sync_tasks.py |
SyncPulses |
8 |
1 |
0 |
88% |
| ibllib/pipes/tasks.py |
Task |
201 |
32 |
0 |
84% |
| ibllib/pipes/tasks.py |
Pipeline |
99 |
18 |
0 |
82% |
| ibllib/pipes/training_preprocessing.py |
TrainingRegisterRaw |
1 |
1 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingTrials |
24 |
15 |
0 |
38% |
| ibllib/pipes/training_preprocessing.py |
TrainingAudio |
1 |
1 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingDLC |
1 |
1 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingStatus |
15 |
15 |
0 |
0% |
| ibllib/pipes/training_preprocessing.py |
TrainingExtractionPipeline |
11 |
11 |
0 |
0% |
| ibllib/pipes/transfer_rig_data.py |
(no class) |
17 |
5 |
0 |
71% |
| ibllib/pipes/video_tasks.py |
VideoRegisterRaw |
12 |
10 |
0 |
17% |
| ibllib/pipes/video_tasks.py |
VideoConvert |
27 |
3 |
0 |
89% |
| ibllib/pipes/video_tasks.py |
VideoSyncQcCamlog |
10 |
1 |
0 |
90% |
| ibllib/pipes/video_tasks.py |
VideoSyncQcNidq |
14 |
2 |
0 |
86% |
| ibllib/pipes/video_tasks.py |
DLC |
76 |
74 |
0 |
3% |
| ibllib/pipes/video_tasks.py |
EphysPostDLC |
88 |
86 |
0 |
2% |
| ibllib/pipes/video_tasks.py |
LightningPose |
53 |
41 |
0 |
23% |
| ibllib/pipes/widefield_tasks.py |
WidefieldCompress |
15 |
1 |
0 |
93% |
| ibllib/pipes/widefield_tasks.py |
WidefieldPreprocess |
18 |
10 |
0 |
44% |
| ibllib/pipes/widefield_tasks.py |
WidefieldFOV |
4 |
4 |
0 |
0% |
| ibllib/pipes/widefield_tasks.py |
(no class) |
42 |
2 |
0 |
95% |
| ibllib/plots/figures.py |
BehaviourPlots |
33 |
33 |
0 |
0% |
| ibllib/plots/figures.py |
HistologySlices |
25 |
25 |
0 |
0% |
| ibllib/plots/figures.py |
LfpPlots |
33 |
33 |
0 |
0% |
| ibllib/plots/figures.py |
ApPlots |
21 |
21 |
0 |
0% |
| ibllib/plots/figures.py |
SpikeSorting |
54 |
54 |
0 |
0% |
| ibllib/plots/figures.py |
BadChannelsAp |
42 |
42 |
0 |
0% |
| ibllib/plots/misc.py |
Density |
30 |
30 |
0 |
0% |
| ibllib/plots/misc.py |
Traces |
23 |
23 |
0 |
0% |
| ibllib/plots/misc.py |
(no class) |
19 |
3 |
0 |
84% |
| ibllib/plots/snapshot.py |
ReportSnapshot |
17 |
3 |
0 |
82% |
| ibllib/plots/snapshot.py |
ReportSnapshotProbe |
65 |
65 |
0 |
0% |
| ibllib/plots/snapshot.py |
Snapshot |
44 |
3 |
0 |
93% |
| ibllib/qc/alignment_qc.py |
AlignmentQC |
186 |
56 |
0 |
70% |
| ibllib/qc/base.py |
QC |
89 |
9 |
0 |
90% |
| ibllib/qc/camera.py |
CameraQC |
488 |
57 |
0 |
88% |
| ibllib/qc/camera.py |
CameraQCCamlog |
84 |
84 |
0 |
0% |
| ibllib/qc/camera.py |
(no class) |
75 |
2 |
0 |
97% |
| ibllib/qc/critical_reasons.py |
Note |
67 |
17 |
0 |
75% |
| ibllib/qc/critical_reasons.py |
CriticalNote |
17 |
3 |
0 |
82% |
| ibllib/qc/critical_reasons.py |
SignOffNote |
31 |
4 |
0 |
87% |
| ibllib/qc/dlc.py |
DlcQC |
137 |
33 |
0 |
76% |
| ibllib/qc/qcplots.py |
(no class) |
8 |
8 |
0 |
0% |
| ibllib/qc/task_extractors.py |
TaskQCExtractor |
95 |
20 |
0 |
79% |
| ibllib/qc/task_metrics.py |
TaskQC |
60 |
4 |
0 |
93% |
| ibllib/qc/task_metrics.py |
HabituationQC |
59 |
5 |
0 |
92% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
DataFrameModel |
37 |
37 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
PlotCanvas |
9 |
9 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
PlotWindow |
6 |
6 |
0 |
0% |
| ibllib/qc/task_qc_viewer/ViewEphysQC.py |
GraphWindow |
38 |
38 |
0 |
0% |
| ibllib/qc/task_qc_viewer/task_qc.py |
QcFrame |
59 |
8 |
0 |
86% |
| ibllib/qc/task_qc_viewer/task_qc.py |
(no class) |
39 |
1 |
0 |
97% |