Coverage for ibllib/atlas/genes.py: 0%
5 statements
« prev ^ index » next coverage.py v7.5.4, created at 2024-07-08 17:16 +0100
« prev ^ index » next coverage.py v7.5.4, created at 2024-07-08 17:16 +0100
1"""Gene expression maps."""
3from iblatlas.genomics import agea
4from ibllib.atlas import deprecated_decorator
7@deprecated_decorator
8def allen_gene_expression(filename='gene-expression.pqt', folder_cache=None):
9 """
10 Reads in the Allen gene expression experiments binary data.
11 :param filename:
12 :param folder_cache:
13 :return: a dataframe of experiments, where each record corresponds to a single gene expression
14 and a memmap of all experiments volumes, size (4345, 58, 41, 67) corresponding to
15 (nexperiments, ml, dv, ap). The spacing between slices is 200 um
16 """
18 return agea.load(filename=filename, folder_cache=folder_cache)