Coverage report: 69%

coverage.py v7.3.2, created at 2023-10-11 11:13 +0100

Module statements missing excluded coverage
brainbox/__init__.py 5 2 0 60%
brainbox/atlas.py 81 81 0 0%
brainbox/behavior/dlc.py 289 47 0 84%
brainbox/behavior/pyschofit.py 92 92 0 0%
brainbox/behavior/training.py 350 104 0 70%
brainbox/behavior/wheel.py 198 65 0 67%
brainbox/core.py 16 3 0 81%
brainbox/ephys_plots.py 255 168 0 34%
brainbox/io/one.py 626 273 0 56%
brainbox/io/spikeglx.py 124 32 0 74%
brainbox/lfp.py 35 35 0 0%
brainbox/metrics/single_units.py 238 113 0 53%
brainbox/plot.py 244 217 0 11%
brainbox/plot_base.py 284 76 0 73%
brainbox/population/cca.py 203 171 0 16%
brainbox/population/decode.py 168 36 0 79%
brainbox/processing.py 105 59 0 44%
brainbox/quality/lfp_qc.py 71 71 0 0%
brainbox/quality/permutation_test.py 40 40 0 0%
brainbox/singlecell.py 99 41 0 59%
brainbox/spike_features.py 25 25 0 0%
brainbox/task/_knockoff.py 102 94 0 8%
brainbox/task/_statsmodels.py 229 210 0 8%
brainbox/task/closed_loop.py 179 29 0 84%
brainbox/task/passive.py 101 6 0 94%
brainbox/task/trials.py 160 78 0 51%
brainbox/video.py 28 1 0 96%
ibllib/__init__.py 9 1 0 89%
ibllib/atlas/atlas.py 28 4 0 86%
ibllib/atlas/flatmaps.py 14 4 0 71%
ibllib/atlas/genes.py 5 5 0 0%
ibllib/atlas/plots.py 29 7 0 76%
ibllib/atlas/regions.py 14 2 0 86%
ibllib/ephys/ephysqc.py 313 99 0 68%
ibllib/ephys/spikes.py 120 20 0 83%
ibllib/ephys/sync_probes.py 171 21 0 88%
ibllib/exceptions.py 18 1 0 94%
ibllib/io/extractors/base.py 185 32 0 83%
ibllib/io/extractors/biased_trials.py 104 6 0 94%
ibllib/io/extractors/bpod_trials.py 61 9 0 85%
ibllib/io/extractors/camera.py 348 7 0 98%
ibllib/io/extractors/ephys_fpga.py 377 33 46 91%
ibllib/io/extractors/ephys_passive.py 310 91 0 71%
ibllib/io/extractors/fibrephotometry.py 109 6 0 94%
ibllib/io/extractors/habituation_trials.py 53 4 0 92%
ibllib/io/extractors/mesoscope.py 263 40 9 85%
ibllib/io/extractors/opto_trials.py 32 13 0 59%
ibllib/io/extractors/passive_plotting.py 51 40 0 22%
ibllib/io/extractors/signatures.py 33 33 0 0%
ibllib/io/extractors/training_audio.py 105 31 0 70%
ibllib/io/extractors/training_trials.py 377 27 0 93%
ibllib/io/extractors/training_wheel.py 218 28 0 87%
ibllib/io/extractors/video_motion.py 229 95 0 59%
ibllib/io/extractors/widefield.py 112 7 0 94%
ibllib/io/ffmpeg.py 32 1 0 97%
ibllib/io/flags.py 133 82 0 38%
ibllib/io/globus.py 48 25 0 48%
ibllib/io/npy_header.py 13 13 0 0%
ibllib/io/raw_daq_loaders.py 167 28 0 83%
ibllib/io/raw_data_loaders.py 433 69 0 84%
ibllib/io/session_params.py 193 26 0 87%
ibllib/io/video.py 115 4 0 97%
ibllib/misc/misc.py 22 11 0 50%
ibllib/oneibl/data_handlers.py 196 134 0 32%
ibllib/oneibl/patcher.py 281 186 0 34%
ibllib/oneibl/registration.py 214 15 0 93%
ibllib/oneibl/stream.py 21 21 0 0%
ibllib/pipes/__init__.py 4 2 0 50%
ibllib/pipes/audio_tasks.py 37 1 0 97%
ibllib/pipes/base_tasks.py 201 7 0 97%
ibllib/pipes/behavior_tasks.py 216 53 0 75%
ibllib/pipes/dynamic_pipeline.py 216 15 0 93%
ibllib/pipes/ephys_alignment.py 215 77 0 64%
ibllib/pipes/ephys_preprocessing.py 767 166 0 78%
ibllib/pipes/ephys_tasks.py 456 197 0 57%
ibllib/pipes/histology.py 373 247 0 34%
ibllib/pipes/local_server.py 143 57 0 60%
ibllib/pipes/mesoscope_tasks.py 520 93 0 82%
ibllib/pipes/misc.py 668 273 0 59%
ibllib/pipes/photometry_tasks.py 46 11 0 76%
ibllib/pipes/purge_rig_data.py 47 47 0 0%
ibllib/pipes/remote_server.py 81 81 0 0%
ibllib/pipes/scan_fix_passive_files.py 63 2 0 97%
ibllib/pipes/sync_tasks.py 82 4 0 95%
ibllib/pipes/tasks.py 395 47 0 88%
ibllib/pipes/training_preprocessing.py 96 4 0 96%
ibllib/pipes/training_status.py 584 55 0 91%
ibllib/pipes/transfer_rig_data.py 56 6 0 89%
ibllib/pipes/video_tasks.py 226 94 0 58%
ibllib/pipes/widefield_tasks.py 87 15 0 83%
ibllib/plots/figures.py 511 165 0 68%
ibllib/plots/misc.py 149 101 0 32%
ibllib/plots/snapshot.py 163 54 0 67%
ibllib/qc/alignment_qc.py 228 75 0 67%
ibllib/qc/base.py 138 11 0 92%
ibllib/qc/camera.py 662 141 0 79%
ibllib/qc/critical_reasons.py 230 26 0 89%
ibllib/qc/dlc.py 168 8 0 95%
ibllib/qc/qcplots.py 47 47 0 0%
ibllib/qc/task_extractors.py 116 4 0 97%
ibllib/qc/task_metrics.py 381 13 0 97%
ibllib/tests/__init__.py 9 2 0 78%
ibllib/tests/fixtures/utils.py 122 3 0 98%
ibllib/time.py 31 1 0 97%
Total 18503 5655 68 69%

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21 files skipped due to complete coverage.