Coverage for ibllib/atlas/genes.py: 0%

1"""Gene expression maps.""" 

2 

3from iblatlas import genes 

4from ibllib.atlas import deprecated_decorator 

5 

6 

7@deprecated_decorator 

8def allen_gene_expression(filename='gene-expression.pqt', folder_cache=None): 

9 """ 

10 Reads in the Allen gene expression experiments binary data. 

11 :param filename: 

12 :param folder_cache: 

13 :return: a dataframe of experiments, where each record corresponds to a single gene expression 

14 and a memmap of all experiments volumes, size (4345, 58, 41, 67) corresponding to 

15 (nexperiments, ml, dv, ap). The spacing between slices is 200 um 

16 """ 

17 

18 return genes.allen_gene_expression(filename=filename, folder_cache=folder_cache)