Coverage report: 70%

Files Functions Classes

coverage.py v7.5.0, created at 2024-04-25 01:12 +0100

File statements missing excluded coverage
brainbox/__init__.py 5 2 0 60%
brainbox/atlas.py 81 81 0 0%
brainbox/behavior/dlc.py 288 47 0 84%
brainbox/behavior/training.py 350 103 0 71%
brainbox/behavior/wheel.py 198 65 0 67%
brainbox/core.py 16 3 0 81%
brainbox/ephys_plots.py 255 168 0 34%
brainbox/io/one.py 671 285 0 58%
brainbox/io/spikeglx.py 124 32 0 74%
brainbox/lfp.py 35 35 0 0%
brainbox/metrics/single_units.py 238 113 0 53%
brainbox/plot.py 244 217 0 11%
brainbox/plot_base.py 284 76 0 73%
brainbox/population/cca.py 203 171 0 16%
brainbox/population/decode.py 168 36 0 79%
brainbox/processing.py 105 59 0 44%
brainbox/quality/lfp_qc.py 71 71 0 0%
brainbox/quality/permutation_test.py 40 40 0 0%
brainbox/singlecell.py 99 41 0 59%
brainbox/spike_features.py 25 25 0 0%
brainbox/task/_knockoff.py 102 94 0 8%
brainbox/task/_statsmodels.py 229 210 0 8%
brainbox/task/closed_loop.py 179 29 0 84%
brainbox/task/passive.py 101 6 0 94%
brainbox/task/trials.py 160 78 0 51%
brainbox/video.py 28 1 0 96%
ibllib/__init__.py 9 1 0 89%
ibllib/atlas/atlas.py 28 4 0 86%
ibllib/atlas/flatmaps.py 14 4 0 71%
ibllib/atlas/genes.py 5 5 0 0%
ibllib/atlas/plots.py 29 7 0 76%
ibllib/atlas/regions.py 14 2 0 86%
ibllib/ephys/ephysqc.py 287 74 0 74%
ibllib/ephys/spikes.py 120 20 0 83%
ibllib/ephys/sync_probes.py 171 21 0 88%
ibllib/exceptions.py 18 1 0 94%
ibllib/io/extractors/base.py 193 18 0 91%
ibllib/io/extractors/biased_trials.py 110 3 0 97%
ibllib/io/extractors/bpod_trials.py 61 12 0 80%
ibllib/io/extractors/camera.py 362 13 0 96%
ibllib/io/extractors/ephys_fpga.py 531 46 52 91%
ibllib/io/extractors/ephys_passive.py 310 91 0 71%
ibllib/io/extractors/fibrephotometry.py 109 6 0 94%
ibllib/io/extractors/habituation_trials.py 70 8 0 89%
ibllib/io/extractors/mesoscope.py 321 29 9 91%
ibllib/io/extractors/opto_trials.py 32 13 0 59%
ibllib/io/extractors/passive_plotting.py 51 40 0 22%
ibllib/io/extractors/signatures.py 33 33 0 0%
ibllib/io/extractors/training_audio.py 105 31 0 70%
ibllib/io/extractors/training_trials.py 377 27 0 93%
ibllib/io/extractors/training_wheel.py 218 28 0 87%
ibllib/io/extractors/video_motion.py 620 344 0 45%
ibllib/io/extractors/widefield.py 119 11 0 91%
ibllib/io/ffmpeg.py 32 1 0 97%
ibllib/io/flags.py 133 82 0 38%
ibllib/io/npy_header.py 13 13 0 0%
ibllib/io/raw_daq_loaders.py 167 28 0 83%
ibllib/io/raw_data_loaders.py 450 60 0 87%
ibllib/io/session_params.py 165 3 0 98%
ibllib/io/video.py 115 4 0 97%
ibllib/misc/misc.py 22 11 0 50%
ibllib/misc/qt.py 20 8 6 60%
ibllib/oneibl/data_handlers.py 219 144 0 34%
ibllib/oneibl/patcher.py 343 146 0 57%
ibllib/oneibl/registration.py 252 29 0 88%
ibllib/oneibl/stream.py 21 21 0 0%
ibllib/pipes/__init__.py 3 2 0 33%
ibllib/pipes/audio_tasks.py 37 1 0 97%
ibllib/pipes/base_tasks.py 221 9 0 96%
ibllib/pipes/behavior_tasks.py 269 43 0 84%
ibllib/pipes/dynamic_pipeline.py 264 20 0 92%
ibllib/pipes/ephys_alignment.py 215 77 0 64%
ibllib/pipes/ephys_preprocessing.py 780 168 0 78%
ibllib/pipes/ephys_tasks.py 456 191 0 58%
ibllib/pipes/histology.py 382 251 0 34%
ibllib/pipes/local_server.py 140 56 0 60%
ibllib/pipes/mesoscope_tasks.py 545 92 0 83%
ibllib/pipes/misc.py 696 281 0 60%
ibllib/pipes/photometry_tasks.py 46 11 0 76%
ibllib/pipes/purge_rig_data.py 46 46 0 0%
ibllib/pipes/remote_server.py 81 81 0 0%
ibllib/pipes/scan_fix_passive_files.py 63 2 0 97%
ibllib/pipes/sync_tasks.py 82 4 0 95%
ibllib/pipes/tasks.py 399 47 0 88%
ibllib/pipes/training_preprocessing.py 108 5 0 95%
ibllib/pipes/training_status.py 573 60 0 90%
ibllib/pipes/transfer_rig_data.py 56 6 0 89%
ibllib/pipes/video_tasks.py 396 219 0 45%
ibllib/pipes/widefield_tasks.py 90 17 0 81%
ibllib/plots/figures.py 517 165 0 68%
ibllib/plots/misc.py 152 103 0 32%
ibllib/plots/snapshot.py 161 53 0 67%
ibllib/qc/alignment_qc.py 230 75 0 67%
ibllib/qc/base.py 133 9 0 93%
ibllib/qc/camera.py 665 144 0 78%
ibllib/qc/critical_reasons.py 230 27 0 88%
ibllib/qc/dlc.py 172 8 0 95%
ibllib/qc/qcplots.py 47 47 0 0%
ibllib/qc/task_extractors.py 116 20 0 83%
ibllib/qc/task_metrics.py 427 17 0 96%
ibllib/qc/task_qc_viewer/ViewEphysQC.py 129 97 0 25%
ibllib/qc/task_qc_viewer/task_qc.py 148 18 0 88%
ibllib/tests/__init__.py 9 2 0 78%
ibllib/tests/fixtures/utils.py 139 5 0 96%
ibllib/time.py 24 1 0 96%
Total 19881 6010 80 70%

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22 files skipped due to complete coverage.